RNA id: AMCG00013152


Basic Information

Item Value
RNA id AMCG00013152
length 2367
RNA type mRNA
GC content 0.51
exon number 24
gene id AMCG00013152
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22379235 ~ 22470187 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCATTGCTGCCGCAGTCAGACGAGGCAGAGCCAGAGCACTTTGATGGGTTGTCTTTGCTGTACTGGATGATAATGGGTCCACATGGAATTAACCGAGCAGTGCAGCGCGTGGTGCTCTCCGACTGTAAACAAGGATTAGGGGTTAAAGTCATTGGAGGCTATAAAGACCTGACAGGGGAAGAATATGgcatttttattaaaaggaTTTTACCAGGAGGGGTGGCTGCACAGGATGgaagATTAAAGCGAGGTGACCTTATTTTAGAAGTCAATAATATGAGTCTTGGAGGCGTAACCAATGaaagGGCGGTGGACATCCTGCGCATGGCCTCGGCCTCCAACCACATGTCTCTGTTGATAGCACGCGATGATGAAGCACGGAGAGAATTCCTCGACCTATTGGAGAAGTATGGCTCCATCAGTAACACCGGCTCAGAGAGCAGCTCCCCCACACCTTCAGCCCTAGGAAAACTGGCAGATAACGCATCGTCCTCATCGTCTTCGAGGTCAACCAGTCCCCTGCTTCTCAGTCCAAAGGATGTCACAAGCTATTCTGGCAGCTATACTGTCCCAGCAGTACCACAGCTAATTAATGACAGTGCAATTCAGTTGATATGTGTTGCCAAGGGAACAGGCTTAGGCCTGAACATCATGGGAGGAGCAAACCGCGCCGAGGGGCCTATGGTTTATATTCAGGAAATCGTACCAGGGGGAGACTGCCAGAAGGATGGACGGCTTAAAGCAAGAGACCAGCTAGTATCTGTAAATAAAGAGTCCTTAATTGGAGTTACATATGAAGAAGCAAAAAGCATATTAACGCGTACGAAACTACGGCCAGACCCCACGGTGGAGATCGCGTTCATTCGGAGAAAATCCTCCTCCAGTTCTGGTAGTGCCCCACAGAGCCCCATTTCGCTGCAGCCTCCAGTCAATGGGAACAGCCAGTTACTGAGGCCCACCGGTCTGGGACTGCTGTCTCCCCCAGGGAACCTTATTCCAAAGATTTCATCCACCCCTAACACAGGAAGTGAGACTTTGCCCTCTGTGAAACTAAGCCAAATCCGAGTGGCTCCTTTGAAGAAAGACCAGTCTACTATAATCACACCAGTTACAACTCCTCCAGCTGACTCCAACTCTGTTGGTGAAACTTTGAAGGAGAGCTCTGAAGAAGAGCCGGGTTTTGAAAACCGGACAGATGGCAAATCACAAACTGTTTGTGAAGGAAGCGATGGAGGCGGCACAAGCGACTGCCAGACTGCTCACTTGGAAGAGGTGATGTCTGGCAGCCAGGCCGACGGCTCATCTGCACACAGGAAGTTCTCTCTTCATTCGGCCAGTCGATTACAGTTTGCGAAGTTGGAGGAGGTTTCTGCATCCAATTCTGAGGATCTGGGTGAAATGGAAGGACTGAGAAAGGACCATATTGGGGCTTTAAGGGAGGTGAAGCGACTGCAGgatCAGTTGACAGAATCAGAAAGACGACGCCTTCAGATGCAAGAAGAGCTGAAGAAAGTGAAACAGGAAGCAAAAGCGGCGGTGGAGGAGACTAAAGCCCTGCGCACTCGGATTCACCTCGCAGAGGCCGCCCAGAAACAAGCCCGAGGAATGGAGATGGACTATGAGGAAGTCATCCATCTCCTGGAGGCCGAGATAGCCGAGATGAAATCCCAGCTCGCGGCTCAGCCCGCCCACACTAAAGAAGAAGCTCAAGATCACAAAAAGAGAATTGCTGTGCTGGAGTGTCAGCTCAGAAAATCTGAAGGTGCCAAGAAAGGATTTGAGGTGGCCACGGAGAAGCTGTTGCACTTTGTAGAGCAGCCCTCTGCTGCCTTTCTCAAATTGCAACAGCAGAGCTCGAGTCACAGAGATATCAAGTTCTGCGAACGACCAGAAGATTGGCATGTCTTCCTCCTCACAAGCAATCGCTGCACGGCTGGGAAGAAAGAACCCCTGGACAGCAAGCGCCCTCGTTTTTCACACAATCTAGCCTGTATTGACTGCCCCTTGTGCAGGATTGGTAAAATGCTCATTCGCCCAAATGAAGACGGGCAGCTGCACTTAAACATGGGCTTAGACGTGATTGTCGATTCCCGGGCTCCTCTGAGCTGCAGCTCCTCCACAATGCAGAGGCAAGAGTGCGCACTGAAACGTGTCTCCCACACCAGCCAGCATGTTTTCTGTGTAACTGGAGATGAAGGTCTGCCGTATGGATGGGAAGAGGCTTACACAGCAGATGGGATCAAGTACTTTATCAACCATGTGACTCAGACCACGTCATGGATTCACCCTGTGACCAGCACCCTCAGCCTGTCTGAGCGAGAAGGGGAGGACTTCAGCAGAGACCTCCCTGAACAGAGGAGTTAA

Function

GO: NA

KEGG:

id description
K15302 STXBP4, SYNIP; syntaxin-binding protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52945 lncRNA upstream 74493 22300573 ~ 22304742 (+) True G42464
TU52939 lncRNA upstream 112599 22266357 ~ 22266636 (+) True G42459
TU52926 lncRNA upstream 119323 22257506 ~ 22259912 (+) False AMCG00013147
TU52933 lncRNA upstream 119323 22257506 ~ 22259912 (+) False AMCG00013147
TU52918 lncRNA upstream 229448 22149585 ~ 22149787 (+) True G42449
TU52982 lncRNA downstream 44677 22514864 ~ 22570081 (+) True G42488
TU53014 lncRNA downstream 221745 22691932 ~ 22692216 (+) True G42518
TU53059 lncRNA downstream 391628 22861815 ~ 22862982 (+) True G42554
TU53136 lncRNA downstream 1084485 23554672 ~ 23560660 (+) True G42619
TU53241 lncRNA downstream 1314221 23784408 ~ 23831400 (+) True G42705
AMCG00013149 mRNA upstream 86734 22276342 ~ 22292501 (+) True AMCG00013149
AMCG00013147 mRNA upstream 118419 22248497 ~ 22260816 (+) True AMCG00013147
AMCG00013148 mRNA upstream 150739 21930055 ~ 22228496 (+) True AMCG00013148
AMCG00013146 mRNA upstream 467494 21773242 ~ 21911741 (+) True AMCG00013146
AMCG00013129 mRNA upstream 794218 21551172 ~ 21585017 (+) True AMCG00013129
AMCG00013154 mRNA downstream 27206 22497393 ~ 22498928 (+) True AMCG00013154
AMCG00013155 mRNA downstream 42642 22512829 ~ 22514649 (+) True AMCG00013155
AMCG00013158 mRNA downstream 178989 22649176 ~ 22655621 (+) True AMCG00013158
AMCG00013161 mRNA downstream 203015 22673202 ~ 22858651 (+) True AMCG00013161
AMCG00013162 mRNA downstream 411721 22881908 ~ 22923730 (+) True AMCG00013162
TU52922 other upstream 133445 22242429 ~ 22245790 (+) True G42453
TU52772 other upstream 892427 21426660 ~ 21486808 (+) True G42344
TU52771 other upstream 892427 21484907 ~ 21486808 (+) False G42344
TU52773 other upstream 892427 21485321 ~ 21486808 (+) False G42344
TU52756 other upstream 960448 21370843 ~ 21418787 (+) True AMCG00013126
TU53407 other downstream 2277305 24747492 ~ 24749395 (+) True G42846
TU53419 other downstream 2298237 24768424 ~ 24770148 (+) True G42858
TU53706 other downstream 3049980 25520167 ~ 25521681 (+) False AMCG00013236
TU53847 other downstream 3784792 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 4054639 26524826 ~ 26540049 (+) True G43263

Expression Profile