RNA id: AMCG00013155



Basic Information


Item Value
RNA id AMCG00013155
length 426
RNA type mRNA
GC content 0.58
exon number 2
gene id AMCG00013155
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22512829 ~ 22514649 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTGCCCTCATCTCGCAATACTCCCAGCCCAATTGACCCTGAGAGCATCCAGGTCCCGGTGGGCTATGAGCCAGACCCCGCAGACTTGGCCCTATCCAGCGTCCCCGGACAGGAGATGTTTGACCCTCGCAAGCGGAAGTTCTCAGAGGAAGAGCTCAAACCACAGCCAATGATCAAAAAGGCCCGCAAGGTCTTCATTCCAGACGATATGAAGGACGACAAATACTGGGCAAGGCGCAGAAAGAACAACATGGCTGCCAAGAGGTCGAGAGACGCCAGGCGGCTGAAGGAGAACCAGATCGCCATTCGTGCCGGCTTCCTGGAGAAGGAGAATTCAGCCCTGCGCCAGGAGGTGGCCGACTTACGGAAAGAGCTGGGCCGCTGCAAGAACATTCTGGCCAAATACGAGTCCCAGCACGGGCCCATG

Function


GO: NA

KEGG:

id description
K09057 HLF; hepatic leukemia factor

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU52945 lncRNA upstream 208087 22300573 ~ 22304742 (+) True G42464
TU52939 lncRNA upstream 246193 22266357 ~ 22266636 (+) True G42459
TU52926 lncRNA upstream 252917 22257506 ~ 22259912 (+) False AMCG00013147
TU52933 lncRNA upstream 252917 22257506 ~ 22259912 (+) False AMCG00013147
TU52918 lncRNA upstream 363042 22149585 ~ 22149787 (+) True G42449
TU52982 lncRNA downstream 215 22514864 ~ 22570081 (+) True G42488
TU53014 lncRNA downstream 177283 22691932 ~ 22692216 (+) True G42518
TU53059 lncRNA downstream 347166 22861815 ~ 22862982 (+) True G42554
TU53136 lncRNA downstream 1040023 23554672 ~ 23560660 (+) True G42619
TU53241 lncRNA downstream 1269759 23784408 ~ 23831400 (+) True G42705
AMCG00013154 mRNA upstream 13901 22497393 ~ 22498928 (+) True AMCG00013154
AMCG00013152 mRNA upstream 42642 22379235 ~ 22470187 (+) True AMCG00013152
AMCG00013149 mRNA upstream 220328 22276342 ~ 22292501 (+) True AMCG00013149
AMCG00013147 mRNA upstream 252013 22248497 ~ 22260816 (+) True AMCG00013147
AMCG00013148 mRNA upstream 284333 21930055 ~ 22228496 (+) True AMCG00013148
AMCG00013158 mRNA downstream 134527 22649176 ~ 22655621 (+) True AMCG00013158
AMCG00013161 mRNA downstream 158553 22673202 ~ 22858651 (+) True AMCG00013161
AMCG00013162 mRNA downstream 367259 22881908 ~ 22923730 (+) True AMCG00013162
AMCG00013165 mRNA downstream 886491 23401140 ~ 23410915 (+) True AMCG00013165
AMCG00013166 mRNA downstream 919191 23433840 ~ 23443384 (+) True AMCG00013166
TU52922 other upstream 267039 22242429 ~ 22245790 (+) True G42453
TU52772 other upstream 1026021 21426660 ~ 21486808 (+) True G42344
TU52771 other upstream 1026021 21484907 ~ 21486808 (+) False G42344
TU52773 other upstream 1026021 21485321 ~ 21486808 (+) False G42344
TU52756 other upstream 1094042 21370843 ~ 21418787 (+) True AMCG00013126
TU53407 other downstream 2232843 24747492 ~ 24749395 (+) True G42846
TU53419 other downstream 2253775 24768424 ~ 24770148 (+) True G42858
TU53706 other downstream 3005518 25520167 ~ 25521681 (+) False AMCG00013236
TU53847 other downstream 3740330 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 4010177 26524826 ~ 26540049 (+) True G43263

Expression Profile