RNA id: AMCG00013156


Basic Information

Item Value
RNA id AMCG00013156
length 2669
RNA type mRNA
GC content 0.38
exon number 6
gene id AMCG00013156
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22537159 ~ 22549507 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGTCCTAGAGGACTGGTGGTGGCGGACTGGGGGTATAAATGCGATCGCAATGGTGGTAGCATTGTGGCAGGCTCAACTGGGTCTTTAGCAGGACGTCGCCGGTACCCAGACTATCACAATgaggaaaaaactgaaaacagtgcctttctagttgttttttttaagaaggggGATGTGGGATTGTGTGAGAGTAGAGGACGGCTGGTCGAGGTGATATAGgccttttttttctgattttcaaCATCTGAAACACGACTCGTTTGCTTTCAGTTCCTTTGCGATTGTGTGATTCATTTCAACATGAAGAGAGTAAACAGCCTCCAGAGGTTTATGAACAGCCGAGCTGCAGCTAACTGCCGCTACCAGCCCACTTGCTATGAACATGCTGCTAATTGCTACACACATGCGTTCCTTATTGTCCCAGCGTTCGTTGGTACGGCCCTACTGTACCGCCTGTCTGATGACCGCTGGGAGAAGCTCACGGCCTGGGTGTATGGCATGGGGCTCTGTGCCCTCTTCCTCGTGTCTACAGTGTTTCACATCATCTCCTGGAAGAAGAGTCACATGAGgTTAAATCTCCGTGAGCTTGGGCCCCTAGCATCTCATATGCGATGGTTTATCTGGTTAATGGCAGTTGCAGGAACTATATATGTGTTTCACTACCATGAAAAGTATAAACTTGTTGAACTCGCCTTCTATCTAACAATGGGTTTTTTTCCTGCATTGGTTGTGACATCAATGAATAACACGGAAGGACTTCAAGAGCTGGCTTGGGGAGGACTTATCTACTGTCTCGGCGTGTTTTTTTTCAAGTGTGACGGGATTATTCCATTTGCCCACGCTATCTGGCACATCTTTGTTGCCTTGGCAGCAGCAGTACATTATTACGCTATTTGGAAATACCTCTACAGAAGTCCACAAACGGACAGTCTCAGAGATGTATGAAAAGACCCACCAATACTGCATTAGAATTctctaaactttttttttttttttttacttctaaaAGGATAAACTAATTCTTGTGCACTAAAAGAATGGGAATCGGAGATAATTTTCTATCAGCCGAAGGGCACAACCGACAGCCAAAAGTTTACGAATTCAATAGTGTGTCGTTTACCATTTTCTAGCAATGACCTTTGTAATGGCTGAGCTGTTTCTCAGATGGTTACATACTTGCCTGCACACAGCTCAGCCACCGTGAACAGTTTTCAGTCTTCTATTGGGTTTTTTTGTACAGCCACATTGTGTTCTAAAAACAATCTGAGACACTAGGCAACTcactttcttctgctttttttatAAAAGGATTTATGTTCTCATTCCTTAAATTGACAGCATTTTTACAAAAGCAGCTTAAGATAAATCTTTCTGGAAGAACATGAATTAAAGAACTCAAACTTTTGTAGCCAATAAGAAGTCCAATACATTCCATACGCAAATAATGACATACCTCTTTTGTAGACTTATATTCTATCAAAGCCACTTGACGTTTTAGCTGAAAGGTGGTTGAAAAGAGCTGCGGATCCTGTCAAGATTGTTTTAACCAGTTTGTGTCTGCATTTTGAACAagaaattgtgtatttattttttacatttccagtATTGATCCAGGAATTACCCTGATTGCTCTTCCATTTTTATTCAAACTTGTGCACATTAATTATTCAGTATTCATAGTAATGTGGAAGGTGTCAATTTTTGGTCAAATCTAAAAccattatatttttcaacagAGACCAGTTTGTGGACATTAACTGGTCACCAAATGTATAACTGAATTAAGTGTTTGGTGATAcgaactatatatatttttaaattagcattttgcacaaaacattttgcacagtGGTGCATAATTGGTGCAGCTAGGGAGAATTAATTCATTTGGTTGCCTTTTGAAACTTGTAATAGCCATCGCCTCCTGCACATGTAGTCTTTTAACTGatgtaaaaagttaaatgtacaCTTTGGTCTTTGTTTGAATGATGCAACGGGAGACAagactttttttcctctcccagttgAATCCTCTGATGCAAGACGTTTGTGAGGTGGCAATTGATTGAAACCATAGCGGAGTGCATTTACAGTGTGCATTTTAGTCAACTTTCTCAATTTCTAACCTCATTATTATTGGGGGTATTATGACCATGTTCACTGCCTGTGCTctcaaaatgtatgttatgtgtTGCAGTCTGGAAATAATATGAATGGAgttatctccctccctcttgggtcatttatataaaaatccatGTTCATTTTACCTACTTTTCATAGGGGGCAGGCAGCAAACCTCTGTACTGTACAAGTTCAGaataaacaacagaaaatgaaatgcttttgaaatgtaatttgtactttttgttAAAATTGTCTCTTTTGAAAGTGTCTTGTATTTTTTGCTTTAGGCATTCAGTGATATTGGATGGTGATTTAAGCCTTCCTTATCAAATGTGGATATTCTGTGAGTAATTGACCCCTTGACTGTAACTGGTTGGATATTTCAGCtatggcactttttttttttttttaagcataattTTGTGAATacttgtactgtatataattcaaACAATACACCCATTTATTGCAAGCATTTCCTTTTTTGGATTTCTAATATGTGtgaattacttaaaaaaataaataaaaataaataaaaag

Function

GO:

id name namespace
GO:0036302 atrioventricular canal development biological_process
GO:0046578 regulation of Ras protein signal transduction biological_process
GO:0019835 cytolysis biological_process
GO:0003272 endocardial cushion formation biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K11064 MMD; monocyte to macrophage differentiation protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52919 lncRNA downstream 387367 22149581 ~ 22149792 (-) True G42450
TU52907 lncRNA downstream 631562 21893624 ~ 21905597 (-) True G42440
TU52822 lncRNA downstream 1087878 21448892 ~ 21449281 (-) False AMCG00013131
TU52834 lncRNA downstream 1137001 21399644 ~ 21400158 (-) True G42386
TU52831 lncRNA downstream 1190325 21346475 ~ 21346834 (-) True G42383
TU53044 lncRNA upstream 25051 22574558 ~ 22574827 (-) True G42544
TU53058 lncRNA upstream 156559 22706066 ~ 22706337 (-) True G42553
TU53062 lncRNA upstream 266649 22816156 ~ 22816369 (-) True G42557
TU53237 lncRNA upstream 1229418 23778925 ~ 23779350 (-) True G42704
TU53286 lncRNA upstream 1278539 23828046 ~ 23839146 (-) False AMCG00013184
AMCG00013153 mRNA downstream 161799 22370865 ~ 22375360 (-) True AMCG00013153
AMCG00013151 mRNA downstream 170149 22319662 ~ 22367010 (-) True AMCG00013151
AMCG00013150 mRNA downstream 224402 22293328 ~ 22312757 (-) True AMCG00013150
AMCG00013145 mRNA downstream 497925 22023976 ~ 22039234 (-) True AMCG00013145
AMCG00013144 mRNA downstream 601441 21924602 ~ 21935718 (-) True AMCG00013144
AMCG00013157 mRNA upstream 22269 22571776 ~ 22572060 (-) True AMCG00013157
AMCG00013160 mRNA upstream 61095 22610602 ~ 22631301 (-) True AMCG00013160
AMCG00013159 mRNA upstream 95296 22644803 ~ 22645207 (-) True AMCG00013159
AMCG00013163 mRNA upstream 369791 22919298 ~ 22928441 (-) True AMCG00013163
AMCG00013164 mRNA upstream 380242 22929749 ~ 22937784 (-) True AMCG00013164
TU52819 other downstream 1019982 21336217 ~ 21517177 (-) True G42371
TU52837 other downstream 1022466 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 1122195 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 1161396 21337067 ~ 21375763 (-) True G42381
TU52823 other downstream 1177052 21350660 ~ 21360107 (-) True G42375
TU53293 other upstream 1294576 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 2332612 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 2476369 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 2525886 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 2614476 25163983 ~ 25166758 (-) False AMCG00013223

Expression Profile