RNA id: AMCG00013160


Basic Information

Item Value
RNA id AMCG00013160
length 561
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00013160
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22610602 ~ 22631301 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgaAGAAAAGCAGAACAGTGGACATTCGGCAAGGCTTTTCCAGTAATGGTGCCCAGGCCGTGATTCCCAATAGACTGCTGGCGAAACATCTGGTTTTAGCCAGTGAATACCTGGAGGAACTCATCAAACTGGTGGAGAAGCACAGACATAAGAAAGTAGCCCTACCTGTAGGTGGCCCAAGGAGGAGTTTGAGGAGCGATACCTCCCTGAGAGCCGTCATTGGATATATTGACAACACCCCCACCATTTGTAATATACAGTTCACCGTTGTTGTCGATGGCAAGGGGAATGTCTATGCCCATGAACTCCAGGAGTTGCATCATTTGTCAACCAGTGTGAAGGACTTCTTCAGAACGGGAGGCTCGGATCCTGCAATCAGAACCTACCAAGAGCGACCACTGACAGAAGAGGAAATCCTGGAATACCAGAATGATACGGAGGTTCAGGAAATCGAGAGACGCCACCAGAAAATCATGCAAGATATATTGAAAGACTTTGATGGATTGACTTCAAGAGCCGCAATACCTGCCCCCTTACTGCATAATGCGGTGCTAAAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53044 lncRNA downstream 35775 22574558 ~ 22574827 (-) True G42544
TU52919 lncRNA downstream 460810 22149581 ~ 22149792 (-) True G42450
TU52907 lncRNA downstream 705005 21893624 ~ 21905597 (-) True G42440
TU52822 lncRNA downstream 1161321 21448892 ~ 21449281 (-) False AMCG00013131
TU52834 lncRNA downstream 1210444 21399644 ~ 21400158 (-) True G42386
TU53058 lncRNA upstream 74765 22706066 ~ 22706337 (-) True G42553
TU53062 lncRNA upstream 184855 22816156 ~ 22816369 (-) True G42557
TU53237 lncRNA upstream 1147624 23778925 ~ 23779350 (-) True G42704
TU53286 lncRNA upstream 1196745 23828046 ~ 23839146 (-) False AMCG00013184
TU53294 lncRNA upstream 1214104 23845405 ~ 23847477 (-) False G42749
AMCG00013157 mRNA downstream 38542 22571776 ~ 22572060 (-) True AMCG00013157
AMCG00013156 mRNA downstream 61095 22537159 ~ 22549507 (-) True AMCG00013156
AMCG00013153 mRNA downstream 235242 22370865 ~ 22375360 (-) True AMCG00013153
AMCG00013151 mRNA downstream 243592 22319662 ~ 22367010 (-) True AMCG00013151
AMCG00013150 mRNA downstream 297845 22293328 ~ 22312757 (-) True AMCG00013150
AMCG00013159 mRNA upstream 13502 22644803 ~ 22645207 (-) True AMCG00013159
AMCG00013163 mRNA upstream 287997 22919298 ~ 22928441 (-) True AMCG00013163
AMCG00013164 mRNA upstream 298448 22929749 ~ 22937784 (-) True AMCG00013164
AMCG00013170 mRNA upstream 841232 23472533 ~ 23483799 (-) True AMCG00013170
AMCG00013169 mRNA upstream 855044 23486345 ~ 23492834 (-) True AMCG00013169
TU52819 other downstream 1093425 21336217 ~ 21517177 (-) True G42371
TU52837 other downstream 1095909 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 1195638 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 1234839 21337067 ~ 21375763 (-) True G42381
TU52823 other downstream 1250495 21350660 ~ 21360107 (-) True G42375
TU53293 other upstream 1212782 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 2250818 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 2394575 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 2444092 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 2532682 25163983 ~ 25166758 (-) False AMCG00013223

Expression Profile