RNA id: AMCG00013163


Basic Information

Item Value
RNA id AMCG00013163
length 3678
RNA type mRNA
GC content 0.43
exon number 6
gene id AMCG00013163
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22919298 ~ 22928441 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttccttttcgtTTCATAAAAGAAGGATAGTGGCATCGCAGCAGCCATGGAGGAGTTGAGCGCCGTGGGAGAGCAGGTTTTTGACGCTGAATGCATCCTGAACAAGAGGCTCAGAAAGGGAAAGTTGGAGTATCTGGTGAAGTGGAGAGGTTGGTCATCCAAACACAATAGCTGGGAGCCTGAGGAGAATATCCTTGATCCAAGATTGCTGGCAGCATTTCACAAAAGggaacaagaaaaggaaattctATTTCGCAAACGAGGGAAAAGACCTAGAGGGCGACCACGAAAAAATGTGGAAGCCTCGGCTCCAATAGCAACCAAATCGACCAGCTCTTCGtcgtcatcatcatcttcatcgtcatcttcctcctcctcctcctcctcgtcttcctcttcctcctctgaaGATGAGGACAATGAAACGGAGACGAAACCAGGACCCCGGAGTCGTGAGCTCCATCCGGTGCCACAAAAGAAAGCCCAGGTGATCGTGGCAAAACCAGAACCAGTCAAGAAGAAGAGAGGAAGGAAAGCCCTCCCACCTGAGCTGAAAGCCCTCAGACAGGGCAAGAGCCCCCGCAAGGTGCTAAAAACTGCTGTGAAAGAGCCCCCAGCTGAGCCCAAAGTTGGAATCAAGAAACCACTTCAGCCAGCTAGTTTCACATACCCAGGGATGAGCAGAGGTATGAGGGACAATGTCCCGGGGGGCACTCAAAGTGGGGGCTCTTTTACACAGGGCACCTCTGTGAAAACCTCTTTAAATACAGCTGGATCCAACCGCCCTTTGGCCACAGCCATTCCATCCCTTGGTAGACAGACTACAAATAAGAACACACCAGACTTCAAGCTCTCCGTGTCTGATGTCAGCAGCAGAGCAGGATTAGACTTGAAAATTGCTGCCTCGAAATCCCCTGGTGTTGCAGCACTTAATCTACACAACTCTAAACTCTCAAACAGCAGCCAAGGTGTTGCCCAGGCACCTCTTGGGTCTCCAAATGGGCAGAAAAAGCAGGAGCCACCTGGGCAGATGCTCCTGCCACGGTTGGCAGCCAGCAAGCCAGTCGCTGGTCCCTCCCCTTTGAAAGGCGGTACGAACCAGGCTCTCAACATGCAGGCGTTGAACCTGCAGAGTGTCAGCAAGGTGGTGCAGAGCAGCAGTCCCTCAGGGAATGGGACCACCCATAGTTCAAACCTGGTGAATGTAGGAAGCCCACTTAGAAAAACTGTGGGGGGTATTCCTCGGCAAACAAGCAATTCTGGACAAAATGTTAGTACATCAGGCAGTCAAAACCCAGTCCCCAGAAACAGCATCTCTGGAGGAGAGACTGGGAAGTTGGAGGATAGCAGTCATAAGCGTCCCGCTGAGGGGGAGAAGCACAATAAGAGGGCTGGAAAGGCAGAAAAGGGTCTGATGCAGAACAGCCAGTCAACAGATGGAGGAAGCAACCAGACAAGACAGGAGAGGACAACATCCAAGGACAGCGCCAAGCCCACAAAGGGCTTGAGTGAGATGAGCACTGGGGAGGAGGAGACCAGTTCAGATTCAGACCAGGACTCTCAATTTTCCAGTAACGGACAGAACATGTCCATCTCTGTGCAGACCAACCAGGACTGGAAGCCCACACGCAGCCTGATCGAGCACGTCTTTGTCACGGATGTCACGGCTAACTTGGTCACTGTAACTGTGAAGGAGTCCCCAACCAGCGTGGGGTTTTTCAACATTCGCAATTACTGAACGTGCCATTCTGCATCCCAACACCACTCTCTACTGAACTACAGTTCCCCTGGGCAGACATGGACAGAGCAGAATCGGGCATATCAGAAGGAGGGAAGGAAGATAAGCTATTGCAGAGGCAATGCAGAGAGGAGGTTTGCGGCCGTGGTAATTCTCCATTTATCTAGTATTAGTTCTGTGACCTTTTCCTCCTGTAttgtgctttgctttgttttcatacTGGGCATCTCTTCATGCTTCATGCAAGtcacacagaacaaaaaatacaaactggaaatcTGGATTTGTCCCAAATGGACCTTTTGGTTCATGAAATAATGCTTCTTCAGTATTTACGGATTCCCAATGCTTCAGAGCATTTTCCTGTATTATCATGGCATTGCATGGATACAGGTTATCTTGAGCCATTTTTCAGCAGTGCAGAACAATTCAAATTGATATGTATTCATGGTGTTATCCCAACAGTATGGCTTTAAATACTATTCAATTTAACTTTCCCCCCTCGTGATTGAaaccaacaagaaaacaagatgCAGAGATTAATCTGCATACTTGCAACACATAATTGCATATGCCTTAAGatatacagcaaaataaatacaaaaatcagtttaaaaGTGACAAGTATTTATCTTGaaattttaattacagttttaaaatgggACATTTGAAGTgcaattgtgatttttttatttttattattattattggaagaAGCTCTGGCTTCTAAGCTTTCAGTAACATTTAATGAGAAATCTCACCTGTCTATCGTGTTGCtgattcaatgtcagttgtagGGTCATTAAGGGTTTCCATAAAATAGTTTCTTAGTTCTGCTACATGAAAGGAATACATTAAGACTTGGATGGAATCATATTCCATTGCTTTTAGACTGGAAGTGTGTTTTTGCAAGTAgagtatatttaaaagtattttaaagcgCGGGGTTTACTAGTTTACTAGTAACATGCAAGGACACTTGAAAGTGCTATTATTACAGAGGCAATGGGTCAGATAAATCATCACTTATGAAAATGATCAATTTGATGAATATTACTACTCGttacaaatgtgtaataaaactCAATTCAACAACTGGAATGCTGATTTACAAACCTGAGAAGAATACATATGGAGAATGTTTTaccttccaaaaaaaaaaaaaaagatataaattcAACTTCAGTTGAGAAGTGGATTTAAATATTGATTCCTGCAACAGAATCTAAAAAACTGCCAActgatgttttcatttcccTTGCACCCTGGTTGTTGGCAAatatttttaactatttaaaactgaaatcctCCAACACTCCACATCACATACTGTAAAGTCCGAGGCCAAAATTAAAGTTGGCTTTGGAGTTGGATATTTGAAGCTGTGGAGAGGGCAAAACTGTAGAATTGAACACCTATGTTCTTCTGTGATGGCTTTCTAAGTCTTTTGATTAGACTACAGGAGTGTTATGTTGCCTGAACCAGTTCATCTTCAACATACACCTTGCTCAACAGCCATGATACAACACTGGTCATTTATGAACATTTATTCTACTTATTCTGATACAGGAAGTTGTTTTCTTaccttttcaaaatgctttacaACTCCATCCACTTTTATCCAACTCAATGGatcttttcttctgttcctGGGAGAGGTACAAAATCACAAGTTTGTGAGGTTTCTAAACAACGGAGATCTATAGAAAGCAGCTAAGTTGTTTCCGTTTGAAATCAGAACAAATGAAGTTTactcaaacatttaaacagggTGATGGAGCTTTAAAAACACTGGGGTATGTTGAGTGGGTATATGGCAAGGAGAAATATTTGAGGAAACAGATGCACGGTCGGCCTACttaaaggtttttaaatgtcaagatatgattttaattgaaaaattactaaaaatacactcaaattggggggggggggg

Function

GO: NA

KEGG:

id description
K11451 CBX2; chromobox protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53062 lncRNA downstream 102929 22816156 ~ 22816369 (-) True G42557
TU53058 lncRNA downstream 212961 22706066 ~ 22706337 (-) True G42553
TU53044 lncRNA downstream 344471 22574558 ~ 22574827 (-) True G42544
TU52919 lncRNA downstream 769506 22149581 ~ 22149792 (-) True G42450
TU52907 lncRNA downstream 1013701 21893624 ~ 21905597 (-) True G42440
TU53237 lncRNA upstream 850484 23778925 ~ 23779350 (-) True G42704
TU53286 lncRNA upstream 899605 23828046 ~ 23839146 (-) False AMCG00013184
TU53294 lncRNA upstream 916964 23845405 ~ 23847477 (-) False G42749
TU53287 lncRNA upstream 973002 23901443 ~ 23901920 (-) True G42743
TU53312 lncRNA upstream 984350 23912791 ~ 23917024 (-) True G42760
AMCG00013159 mRNA downstream 274091 22644803 ~ 22645207 (-) True AMCG00013159
AMCG00013160 mRNA downstream 287997 22610602 ~ 22631301 (-) True AMCG00013160
AMCG00013157 mRNA downstream 347238 22571776 ~ 22572060 (-) True AMCG00013157
AMCG00013156 mRNA downstream 369791 22537159 ~ 22549507 (-) True AMCG00013156
AMCG00013153 mRNA downstream 543938 22370865 ~ 22375360 (-) True AMCG00013153
AMCG00013164 mRNA upstream 1308 22929749 ~ 22937784 (-) True AMCG00013164
AMCG00013170 mRNA upstream 544092 23472533 ~ 23483799 (-) True AMCG00013170
AMCG00013169 mRNA upstream 557904 23486345 ~ 23492834 (-) True AMCG00013169
AMCG00013168 mRNA upstream 626231 23554672 ~ 23563336 (-) True AMCG00013168
AMCG00013177 mRNA upstream 782259 23710700 ~ 23721512 (-) True AMCG00013177
TU52819 other downstream 1402121 21336217 ~ 21517177 (-) True G42371
TU52837 other downstream 1404605 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 1504334 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 1543535 21337067 ~ 21375763 (-) True G42381
TU52823 other downstream 1559191 21350660 ~ 21360107 (-) True G42375
TU53293 other upstream 915642 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 1953678 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 2097435 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 2146952 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 2235542 25163983 ~ 25166758 (-) False AMCG00013223

Expression Profile