RNA id: AMCG00013164


Basic Information

Item Value
RNA id AMCG00013164
length 2175
RNA type mRNA
GC content 0.45
exon number 5
gene id AMCG00013164
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22929749 ~ 22937784 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTGTGTGGAGCAGTGCGGTCAGTGTGGTGTAAAGTACAAGATGGTAAAGGGCCTTTTGAGCAGAACCCAAATGATCGTGTTATGGACAATGTCAATGAGCTTCCTCCTGTTGCCTCCATCCCTCGGAGCACCAATGAGTGGCTCTCCAGCCAGGAATCACAACAAGCTGTTGCTCATCTCCTTTGACGGCTTCCGGTGGGACTACGACCACGATGTGGACACCCCACATTTGGATGCAATGGCACAAGATGGGGTCAAAGCCACTTATGTCACTCCACCCTACATCTCCATCACCAGCCCTTCACACTTCACACTGTTGACAGGAAAGTATGTGGAGAACCACGGTGTGATCCATAACATGTGGTTTAACATAACCACCGGAGAGAAGAAGCCATACTACATGACTCAGTTTGTCGATGAATGGTGGGACAATGGCAGCTTGCCTATCTGGattacagcacagaaacagGGTCTGAAGGCTGGCTCACTCCACTTTCCTGGTACTGCACCCACCTACCAGGGTGAGAGGGTTCAGGTGAGCGAGGTGGAGCCACGCTTCTACGATTACAAAAATGAGACAGAGTGGCGGCACAACGTGGATAAGGTGATGAGCTGGCTCAGCGAAAAAAGCCTGGATTTGGTGACACTGTATTTCGGAGAGCCAGACGGCACCGGGCACAAATATGGACCCGATTCGCCAGAGAGAAGGGACATGGTTGCGCAGGTGGACCGCACTGTGGGGTACATCCGCAGCTCCGCCACCCGCCACGGCCTTGCAGACAACCtcaacatcatcatcacagCTGACCACGGCATGAGCACTGTCCTCAAGGCGCCGGCTGTCAAAGAGATCATCCTGTCTGAGATACCAGGATTCAGCTTACGTGACCTCCAGTTCCAAATCACCGACTACGGCCCTGCCAGCCTGCTGCTCCCCAAGGAGGGCCTGCTGGATAAGGTCTACAACATCTTGAAGGATGCACATCCTCACCTGCATGTGTACAAGAAAGAAGACCTGCCCACCCGGCTCCAATACTCCACCAACCCCCGTATCCTGCCCCTCTTTCTCTATGGGGACCCTGGATATGTAATACACGGGCTACTACCACTGCAGTTTAACAAGGGGGAGCACGGCTTTGACAACGAGGCCATGGACATGAAGGCCATTTTTCGGGCAGTTGGGCCAGCCTTCAAGAAGAACCAGGTGGTGGGTCCCTTTGAGACGGTCAATGTTTACGCCCTGATGTGTCACCTGCTGAACATTGAGCCCGAGCCCCACGACGGTTCCCTTGAAGCCACCCAAAACATGCTGATCACATCCCCCGAACAGAGTACAGCTCCACAGAGAAAGACTCAGAAgataaagcagaaaaacaaaaacaaacaagcttcTGATCGTGATATGGAAAGAATGAACATCACCAAGTGATATTTCGGATGAACATAACTGCCTATTACAAATTAGACAAAGAAGAAAGCAACTTCCCATGAATAGACTCTCTCAAAATGTTAGCTCATATTTCTGTTACACCAGGGATATGGGCTTCCTTGGCATGAATActgattgtgtatttttatccATCAGATATAAGTTcatccaacaaaacaaaattcaacTACATTACGCACAACTCTGTTTGTCCTGTGATCGTTTTAAAACAGGAGCATCATTCATAGAAAGCCTGTTGAAAattaactgctttaaaaaatctTAACTGATGACTAGATCATGAACTATAGATAGCATCCACGCAATTTaaagtatgtgtatttattataattgtatgatcccacaggtattttattttacataattattattatgcattgttTTCCTGCAAAGCTGAAGTTAGCAGTTAGGATTCAGTGAGGATGTAATAACTGCATGAAAGCACTGCTACAAGAACTGGTGATTTACAAAATACCAGgcagacacaaaaaaacacattaaaaagtaataaaatcgTCCACAGATGTCATTATCTCTACACTGCATTCTGTAGTATTATGAAAGGCAGTTTCTAACACGTAATATTGATTGTAGAAAAAGAATGTTTACTGTTGACTGTAAAAGGCTTTTCACACATTGTAACCTTAATTATCACAACACTATGTTTATTACATACTTCTATCCTTAGaattcttcaaaataaaaatcaagtgATGCAATACAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K12354 ENPP7; ectonucleotide pyrophosphatase/phosphodiesterase family member 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53062 lncRNA downstream 113380 22816156 ~ 22816369 (-) True G42557
TU53058 lncRNA downstream 223412 22706066 ~ 22706337 (-) True G42553
TU53044 lncRNA downstream 354922 22574558 ~ 22574827 (-) True G42544
TU52919 lncRNA downstream 779957 22149581 ~ 22149792 (-) True G42450
TU52907 lncRNA downstream 1024152 21893624 ~ 21905597 (-) True G42440
TU53237 lncRNA upstream 841141 23778925 ~ 23779350 (-) True G42704
TU53286 lncRNA upstream 890262 23828046 ~ 23839146 (-) False AMCG00013184
TU53294 lncRNA upstream 907621 23845405 ~ 23847477 (-) False G42749
TU53287 lncRNA upstream 963659 23901443 ~ 23901920 (-) True G42743
TU53312 lncRNA upstream 975007 23912791 ~ 23917024 (-) True G42760
AMCG00013163 mRNA downstream 1308 22919298 ~ 22928441 (-) True AMCG00013163
AMCG00013159 mRNA downstream 284542 22644803 ~ 22645207 (-) True AMCG00013159
AMCG00013160 mRNA downstream 298448 22610602 ~ 22631301 (-) True AMCG00013160
AMCG00013157 mRNA downstream 357689 22571776 ~ 22572060 (-) True AMCG00013157
AMCG00013156 mRNA downstream 380242 22537159 ~ 22549507 (-) True AMCG00013156
AMCG00013170 mRNA upstream 534749 23472533 ~ 23483799 (-) True AMCG00013170
AMCG00013169 mRNA upstream 548561 23486345 ~ 23492834 (-) True AMCG00013169
AMCG00013168 mRNA upstream 616888 23554672 ~ 23563336 (-) True AMCG00013168
AMCG00013177 mRNA upstream 772916 23710700 ~ 23721512 (-) True AMCG00013177
AMCG00013178 mRNA upstream 806962 23744746 ~ 23756601 (-) True AMCG00013178
TU52819 other downstream 1412572 21336217 ~ 21517177 (-) True G42371
TU52837 other downstream 1415056 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 1514785 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 1553986 21337067 ~ 21375763 (-) True G42381
TU52823 other downstream 1569642 21350660 ~ 21360107 (-) True G42375
TU53293 other upstream 906299 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 1944335 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 2088092 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 2137609 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 2226199 25163983 ~ 25166758 (-) False AMCG00013223

Expression Profile