RNA id: AMCG00013168


Basic Information

Item Value
RNA id AMCG00013168
length 7281
RNA type mRNA
GC content 0.41
exon number 4
gene id AMCG00013168
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 23554672 ~ 23563336 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGGGGAGGCGGATCTAGTGGGATTCTCTGTAGCAGCAAACGTATGAATGAAAGCATGAATGAAACCCAGCGGTGCATTTGTGGTGTGACTCTCAGGGCCATGTCTCCCCGCAGGACTGAAAGACAAGAGGAATCATGGGTGGTGTGGCTCTGGACGATGGCCCCAGTGGGGTGAAGGCACcagatggggggtgggggtggccaGTCCTGTTTGGCTGCTTCGTCATCACAGGCTTCTCCTACGCCTTCCCAAAGGCCGTCAGTGTCTTCTTCAAGGAACTGATCCGTGAGTTCAATGTGGGCTACAGTGACACGGCCTGGATCTCCTCCATCCTGTTGGCCATGCTGTATGGGACAGGTCCAATTTGTAGCGTGCTGGTGAATCGCTTTGGGTGTCGCCCTGTGATGATGGTGGGCGGCCTCTTTGCCTCGTTGGGGATGGTCATGGCTTCCTTCTCCACCAACATCTTTCACCTCTACTTCTCCACTGGGGTCATCACAGGCTTGGGTTTGTCTCTCAACTTCCAGCCATCTCTGATCATGCTGAACAGATACTTTGATAAGAAGCGCCCCCTGGCCAATGGCCTGGCTGCGGCTGGCAGCCCAGTTTTCCTGTGCTGCCTCTCCCCCCTGGGGCAGATCCTGCAGCAAAAGTATGGCTGGCGAGGTGGTTTCCTCATCCTGGGGGGGATGCTGCTcaactgctgtgtgtgtggggccCTCATGAGGCCCCTggtcccccccaaaaaaactgtGGATCAGGAGAACCTGCAGCCCACAACACtggagaagaagcagaagaagaagctgTTGGACTTCAGTGTATTCAGGGACAGAGGCTTCCTCATCTACACCATCGCCGCCTCCATTATGGTGTTGGGTCTGTTTGTGCCGCCTGTGTTCGTAGTTAGCTACGCCAAGACCCTGAAGTATGAGGACACAGAGTCCGCTGCCCTGCTCTCTGTCCTGGGCTTCATCGACATCTTCGCCCGGCCCACCTGTGGGATCATCGCGGGGATGAAGTGGGTGCGTCCGCGCTGTGTATACCTCTTCAGTTTTGCCATGTTGTTTAATGGCTGCACCGACCTCGTCGGCTCCTTCTCGAAGGACTACAATGCCCTGGTGGCATTTTGCATCTTCTTTGGCATCTCCTACGGCATGGTGGGAGCACTGCAGTTTGAGGTGTTAATGGCCATCGTGGGCACAGAGAAGTTCTCCAGCGCCATCGGCTTGGTACTGCTCATGGAGGCCATCGCTGTTCTGGTGGGGCCGCCCTCCGCAGGCCGGATACTTGACGCCACAGGACACTTCATGTATGTGTTCTTGATAGCAGGGTGTGAGGTGGTGATCTCTGCCCTGGTGCTGGCCTTTGGAAACTACTTCTGCATCAAGAAAAAACCAGCAGAGCCAGAAGCCAAACTGGAGATGGCAGTGACAGCTGCAGAGATGGAGCAACTCAACAAGCCTCCTGGTgaggtggaggaagaggaggaaggggTGAAGGAGCTGAAAGAGGAGAACGTGAAGGAGCACaaagagaagaaggagaaagatGAGGacaaagagaaggagaaggagaaagatgAGGACcatgagaaggagaaggagaagaagaaagatttggacaaagagaaggagaaggagaaagatgtggacaaagagaaggagaaagatgAGGACAAAGAGAAGGAAGAGGACAAGAGGCCTGACAGCGTGAAGGTGGACTCCATTGAGGTGGAGCAGTTCCTCAAGGACAATACGGACAAGAATGGAGAATTGGTCACCAACCCAGAGACCTGTGTTTGAGTGAGGGCCTTGACACAACCAGGCTGACTGAATGGGAGGGAGCGAACCGCACCCCAAcccgccaccccccccccagaatTGTCCCAGATTTGACGTGGGACAAATCTGGAATTTCAGAatcttgtatatttatttaggtGTAATATTTATGTACTCTCTGGGGCTGTGCCATATGAGAATATGCAtccaacacaaaaacatgagaattcaataataacaacagaaaacacatacagaagaaaaaataaaacgatGCACTGGAACAACactccacaaaataaatgaataaattgatCTGTAAAAATGGATTTCACCCTTCTTTATCATCACTGATGGACTGGCCTTGCACAGTACGAAGAGGAGGGTCCTGTTATTGTCCCTTATGTGGAAAGTTCTCCTGGCAGTTTGGTATGtgtttttctactttaaaaCAAGGATTCTATCTAGAGGGTCAATATAGTGGTAAAACAAGAAGAGTGGAATAGGAGGGTGGCACTTGTATGGCACGAGGAACACTGCTGTCGTTTCAGGAGGGTATGCCTATATATCTGCTTTTGCAGGTAGGTGAGCAAGGAAGCCTTTCCAGGGAAACTGGTTGTGGCACAGACTTCttcaaaaatgcttttgaattctttttttgttttttctttactccAAACATGAACTCCCAAAGATATTGGGAAATCAATTTAccgttttgttttgtgtggttttgtttgtttgtttgttttgtcagtgttacgACTCCACATCAAGACTAGCACTATTGGCGGCCATTTTGCATTTCTCTTCATTTCCATCTAGGGCCCAAGTTGTGTGATGAATTGAAATTACTGTGTACTTGATTACTATTAATCCAAAATTACGGGGGATTTGGGTGGTTTGTTAGAGTGACTGTACAGTCCTCAAAGGGAACATTTTGTTACTGAACTGCGATTCAAAATTAAACCAGTTAATCCTAAAAGAAACTCTGCATTAACAAGAAGACTGTTTGAGCAGCGATTTGGCAAAGTCCaaaccaacattaaaaataaatgtaatcaatttctttgttgtttcaCTATACGAGGAGAAAGTTCTTGTCTGCTTGTGGGGGTGTGACCAATCTGGCAATCCTGAGGTTTATTTGTGTGCATAAGAGGaacttatgtaattttgtggGTGAAGGAAGTTACACTGAAGATAAAGGTCACATTGGTAGAGTAACGAGAATGGTTCTGAATCTTGTGTAAGTCCAGACACGTTATAGAATTATTAGGATtacataaaaagcaaaataataacatagaAGAAGTATGCAAGCAACTGCCCTCAGGACATCCTTCCTTGTCTACATCAGTCTTTCTCATGTTTATTGAAGCATTGAGGCCTACAGAACCCCCTTATAGATTgattggggaaaataaaaaaaatcaatgaaatattaaaagcattgAAATGTCAAACATCCTATTTCaccttttgtcttttcttcaaTTTTCATCTCACTATGTCAGTATTAGATAAACCAGCTGATGGGTCTCAGATATCTAGTGAATAAGCAGAATTGGACATTGTCTGATGTcaacgtttattttatttattttgtattaaacaataACGTTGCATTGACTGTGGAGTTTGCAGCTGCTATGTGTTTGAatttgttgtgtatgtgtgtcacactgttttaaaagctttgttgTGTGCTATGGATATTATTGTGTatggtacattttaaaagcaggaatTAATTCCTCAATAACCTTACAATCCTGAactaaaaggagaaaaatagaTGGTACTTaatcttgtgttgttgttttgggggggcAGGGTTTACATGTCATATGTAAACAGACAATGCAAATGAAGAAATGGACAGTCGGCAGCcaacatttttctttgcttaaatttgtaatacattttaaaaagtgaagatATGCTGATGATCATTAGCTATGGAAATGTCGTAGTCTGTCAAGAGTATGTATGCTGCTCAGAGGAAGCTCAGACAGAAGGAATCACAGATTGCAGGGTTCAAGCAGGAAGCTGCAGTCACACAGCGATACCAAGATCTCATCAGCCCAAGTCATAGccattaataaacacataataGCACGCCTTACAATCACATTCAGATAAAACAGAGGATGTCAGGGGAGAATCCACCCCTGAGCAAGGTCCTCAGCCCTTACACTAACTCTTTGAACATTTATAACAACTCACACATTCATGATGGGTGGGCTCTTGCCTTCACTCCCATGTTCAAGGGCAGATAGCCCCCCCTGCCTTCCATCCCATTCATTACAGCTGTGTACCCCCTCATCAAATGCCAAGCAGCAGCAAAAGAGGGAAATGGGATGGTGCCATTCACGTAAgattctctctctttatttttctttttttagtgcCTTACCATTCagacatttctgcctgggagctACCttataatacttaaaaaaagacTCCAAAAAGTAATTGGTAAATAGTTTCCAATACAGTAAGACACAATATTATGCCAACTATACATTTTCCTTACCTGCTTACTAATACAGCAATGAGTATTTTGGCAAGATATCTGAGTCCACTGTCAAATGGCAGGCTAGTCCATAATTTCTATTATGATCTAACCAAAGTCATTTAATATGGAAGGCGGGGAATACATGAGTATGCAACTGTGGGGTTAGGATGCAGAGACTCTTAACAAACTGATGCTATCTTTCAAATACCCAGAATTCCCATCAACCCTCTCTCGCTCCAAAACCCATTATACAGCTGCAGATGGTGTAACCAATCAGAACCCTAGGAAGTTTAATTGAGCACCCAATCAGGGTCCTCGACTCTGACTGGCCCTGTGTGCAACAGTGAAAAGTGAGAGCAGGCTGATTTGGCACTATGCATGGTCAAAGGgagattcttttattttttattatataaaaacatcataACTGCCTATCTATCAGTCTGCATAGGTTCGCATCTTGCACAATGGTGTGTACCATGCACAGAAACAGAAGTGTTCTCCCACATTTCCCCTCTCAGGAAATCAGCTGGGGTGGGGAGGTTGTGGTTAATTTTTACTACATTTCCTCACATTGCAgcttaattcatttttttggtaacattaaatgtgtgcatatgcatcctgttgtttttgtatttttctattttcacattaaatgtttttattttaactccaTTGCTGATTTCATATTATTACAACCTGTCAATTACAAAGGTCATTATttctattaaacaaataatagaatCTATTCTGCTTGTCTGGGTAATACAGAAAGGACTGTACCCGACTGAAAATTACACTTCTACAAATAGAAAGCTCATTTACAAATATCGTTACCAAATGTCCTTTAGGTGAAATGGTTTCATATGGGACTTCATATGTCaatttttaacaatttaactaACTTGTGGTATGAtagatgtatttaaacaaacactaaaGTGCATTCTGAAAGGTTCAATAGTAAATatgatgcaaatgaaaaaaaacattgtagcCTAACATTCTTCAAATATATCCTCTAGTCAGTTACTTTGAaaaattaacattacaaaagtttcaaatttgaatgtgagccaaaaaatataaataaataaataaataaataaataaataaataaataagatgctGAAGAATATTTCAGGGCTAGCATAATGAAATGTGTTTAggttatttgtgtctgtgtgctgtggcaGTTTGATTGCTGCTTCAATCTCGTTGGTTGCAATGCTTTAACGGAGATAATTGCTCTTTGAGAAAACTATAAATAGAGCAGAcgatttatttcaataaatctAATACATCTGTCctgatattttgtatattattatttttgcatccCCTATTGGGGGCTGAATATCAAAATATTCTCTGTAACAGTAtttgtgtatgcgtgtgtatgtgtttttcagaGTTCAGTGGGTCTATATTACGTGTATCAATGTATTACACACCTTGGAGTATGATGactgtaaaatgtttcttttgaatttgaaatgggGAGGGGTGTCCCAAAATGGTGAGGCAATCTTTGTTTCTAAAGTTGGAATTTTTCTTCTGTCCTGCAAGAACAGCAAGTTTGTTTAACATTTCTGTTGGGTGGCAAAACACCAGAGTGCAAAGGCTCACTTGTCATACTGCCATCTTAGATCTTTCTGGGACCAGCCTTTGTATTGTGAAGACAGCAATACCACACCTACACCCAATCCAGAAACAATGCTGTTCGATTTAAATGCCCTTTTACTTAAGAAACTACCGTATTGTACACCTAGAGAGAACTTAGACTTAGAACTAGGGCTGGCACTGGATAGATGACACCGAGTAAAGAAGAAGGATCATCAAAAGTAAAGCACACTTTATGTCCACATTCTCAGCAGAAGACAACAAAAGCAGTAAGATTTATATGATACAAGATCTGAGGGCATCTCAGGCTGTCCCAGGTCCTCTGCTTACACTTTGGCTGTCTATATTGAGCCTATAGTGTTTTAACCTGGCATTCCCCTGAAAGACAGGAAAATTACAGTAAGAAAGAAGAAACCCACTGTGAGATTTGGCAATTGAAtggtaaaaaaactaaatctaaataacaataacagcagcagAGCAGGGAGACAGGACCTTAATTTCAAAATCTTCAAACTATTAGCATATGTAGCATCCAGcacaaataacattaaaacacattctttttGTGATGCGGAGAGGTGCTTCATAAACCCAAACGTGAAAACGCATCTCTGTGAGCTTCCTTCCTTCTCTTTGGACCGTAATCCTGTTTACAGCAGAAAAAGCTGCTTGAAACAATATGCCATATTCCCCTCTAGCACCAATAAAGAGGGAGaaccttttttttaagtaggcAGCAAGGGCTACCTTCTCTCTCACAACAGAGACCATTGAAAAGTAAAAGCTCTACGTTCTCTGTCGTCTGCAGTATTTTGAGCTGAAGACTTACGTTGGGGCATTTCACACCAGCTATTGTCTTCATTACAACTTTTCATGGAGCACAGTTGTCTGTAGTGAGTGCTCAGGCTGTGGGTAATTTCAGCTGTGTTTGGCCAGTATGAAGTCAGTCATTCCGGGTCACCCCTCTCCCTTAATGTCACCCCTCTACTTGTGTGTGGGGGAGAGGTAATATTGAGTTGTGAAAATGtactaaaatgttattttttatttacaaaaaaaactatatatatatatataaatttcatttcaagaaaggaaaatatataaatatacatatatacacacatactgtgtgtgtgtgtatgtgtatgtgtatatatatatatatatatatatatatatatataagctgaTTTCACAGTCAGGTTTACCCTGTCTGTCTACACTGTTCTGTGAATGCACTTTAAATTCACCTCACCTGTAGaagaaactgtatattttttacatgCTTTTATAGTGACCTGTTGCAAAACCTaaccaataaatatttattctgttgAA

Function

GO: NA

KEGG:

id description
K08180 SLC16A3; MFS transporter, MCT family, solute carrier family 16 (monocarboxylic acid transporters), member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53062 lncRNA downstream 738303 22816156 ~ 22816369 (-) True G42557
TU53058 lncRNA downstream 848335 22706066 ~ 22706337 (-) True G42553
TU53044 lncRNA downstream 979845 22574558 ~ 22574827 (-) True G42544
TU52919 lncRNA downstream 1404880 22149581 ~ 22149792 (-) True G42450
TU52907 lncRNA downstream 1649075 21893624 ~ 21905597 (-) True G42440
TU53237 lncRNA upstream 215589 23778925 ~ 23779350 (-) True G42704
TU53286 lncRNA upstream 264710 23828046 ~ 23839146 (-) False AMCG00013184
TU53294 lncRNA upstream 282069 23845405 ~ 23847477 (-) False G42749
TU53287 lncRNA upstream 338107 23901443 ~ 23901920 (-) True G42743
TU53312 lncRNA upstream 349455 23912791 ~ 23917024 (-) True G42760
AMCG00013169 mRNA downstream 61838 23486345 ~ 23492834 (-) True AMCG00013169
AMCG00013170 mRNA downstream 70873 23472533 ~ 23483799 (-) True AMCG00013170
AMCG00013164 mRNA downstream 616888 22929749 ~ 22937784 (-) True AMCG00013164
AMCG00013163 mRNA downstream 626231 22919298 ~ 22928441 (-) True AMCG00013163
AMCG00013159 mRNA downstream 909465 22644803 ~ 22645207 (-) True AMCG00013159
AMCG00013177 mRNA upstream 147364 23710700 ~ 23721512 (-) True AMCG00013177
AMCG00013178 mRNA upstream 181410 23744746 ~ 23756601 (-) True AMCG00013178
AMCG00013176 mRNA upstream 194938 23758274 ~ 23773033 (-) True AMCG00013176
AMCG00013184 mRNA upstream 263273 23826609 ~ 23839097 (-) True AMCG00013184
AMCG00013185 mRNA upstream 303304 23866640 ~ 23882268 (-) True AMCG00013185
TU52819 other downstream 2037495 21336217 ~ 21517177 (-) True G42371
TU52837 other downstream 2039979 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 2139708 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 2178909 21337067 ~ 21375763 (-) True G42381
TU52823 other downstream 2194565 21350660 ~ 21360107 (-) True G42375
TU53293 other upstream 280747 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 1318783 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 1462540 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 1512057 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 1600647 25163983 ~ 25166758 (-) False AMCG00013223

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050364 True 1506 mRNA 0.51 4 NC_007114.7 36160979 ~ 36167394 (+)