RNA id: AMCG00013178


Basic Information

Item Value
RNA id AMCG00013178
length 519
RNA type mRNA
GC content 0.56
exon number 6
gene id AMCG00013178
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 23744746 ~ 23756601 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGCCATTAAGTGTGTGGTTGTGGGCGACGGTGCTGTGGGTAAGACCTGCCTGCTCATCAGTTACACCACCAATGCCTTCCCCGGAGAATACATCCCCACTGTcTTTGATAACTACTCTGCCAATGTCATGGTGGATGGGAAGCCCGTGAACCTGGGATTATGGGATACAGCAGGACAAGAGGACTATGACCGCCTTAGACCGCTCTCCTACCCACAGACGGACGTGTTCTTGATATGCTTTTCTCTGGTCAGCCCGGCGTCTTTTGAAAACGTCCGAGCAAAGCTGGACCTTCGGGACGATAAGGACACCATCGAGCGCCTTCGAGACAAGAAACTGGCACCCATCACCTACCCCCAGGGTCTGGCCATGGCCCGCGAGATTGGTGCTGTGAAGTACCTCGAGTGCTCAGCTCTGACCCAGCGTGGCCTGAAGACTGTGTTCGACGAGGCCATCCGAGCTGTCTTGTGTCCCCCACCCGTCAAAAAGCGCGGCAAGAAGTGTACCGTCTTCTGA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53062 lncRNA downstream 928377 22816156 ~ 22816369 (-) True G42557
TU53058 lncRNA downstream 1038409 22706066 ~ 22706337 (-) True G42553
TU53044 lncRNA downstream 1169919 22574558 ~ 22574827 (-) True G42544
TU52919 lncRNA downstream 1594954 22149581 ~ 22149792 (-) True G42450
TU52907 lncRNA downstream 1839149 21893624 ~ 21905597 (-) True G42440
TU53237 lncRNA upstream 22324 23778925 ~ 23779350 (-) True G42704
TU53286 lncRNA upstream 71445 23828046 ~ 23839146 (-) False AMCG00013184
TU53294 lncRNA upstream 88804 23845405 ~ 23847477 (-) False G42749
TU53287 lncRNA upstream 144842 23901443 ~ 23901920 (-) True G42743
TU53312 lncRNA upstream 156190 23912791 ~ 23917024 (-) True G42760
AMCG00013177 mRNA downstream 23234 23710700 ~ 23721512 (-) True AMCG00013177
AMCG00013168 mRNA downstream 181410 23554672 ~ 23563336 (-) True AMCG00013168
AMCG00013169 mRNA downstream 251912 23486345 ~ 23492834 (-) True AMCG00013169
AMCG00013170 mRNA downstream 260947 23472533 ~ 23483799 (-) True AMCG00013170
AMCG00013164 mRNA downstream 806962 22929749 ~ 22937784 (-) True AMCG00013164
AMCG00013176 mRNA upstream 1673 23758274 ~ 23773033 (-) True AMCG00013176
AMCG00013184 mRNA upstream 70008 23826609 ~ 23839097 (-) True AMCG00013184
AMCG00013185 mRNA upstream 110039 23866640 ~ 23882268 (-) True AMCG00013185
AMCG00013190 mRNA upstream 146317 23902918 ~ 23912316 (-) True AMCG00013190
AMCG00013191 mRNA upstream 160599 23917200 ~ 23927578 (-) True AMCG00013191
TU52819 other downstream 2227569 21336217 ~ 21517177 (-) True G42371
TU52837 other downstream 2230053 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 2329782 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 2368983 21337067 ~ 21375763 (-) True G42381
TU52823 other downstream 2384639 21350660 ~ 21360107 (-) True G42375
TU53293 other upstream 87482 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 1125518 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 1269275 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 1318792 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 1407382 25163983 ~ 25166758 (-) False AMCG00013223

Expression Profile