RNA id: AMCG00013180


Basic Information

Item Value
RNA id AMCG00013180
length 2164
RNA type mRNA
GC content 0.45
exon number 8
gene id AMCG00013180
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 23840594 ~ 23847430 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTTCCCTGCACAGGCTCCATTCGTGTCGACTGCCCAGAGTCCACGAATACAGCCCAATTAGCCAGCTATCCTCCCAAGGTTTGAGCACCGGCCTGTCTGCACACTGCCACACCACCAGCCTCTCCATTGACTGGCAGCTGTCATCTCTGCACGAAATCGCGATCAGCCCCAACAATAATGACGTCCATATTTACCAGAAGAAGGGAAAGGAATGGGTTAAGATCCATGAGCTAACAGAACACAGTGGCCGCATCACAGGTATAGATTGGGCTCCTGAGTCCAACCGCATAGTGACGTGTGCCTCAGACCGAAACGCATATGTGTGGACGCTGAAGGATGGCTTGTGGAAGCCCACCCTGGTTCTGGTTCGGATCAATCGGGCTGCCACCTGCGTCAAGTGGTCCCCCCTGGAGAACAAGTTCGCTCTGGGCAGTGGGGCCAAGCTCATCTCCGTATGCTACTTCGAGAAGGAGAATGACTGGTGGCTGAGTAAGCATATCAAGAAATCCATCTGTTCCACAGTGCTGAATCTGGACTGGCACCCTAACAACGTCCTCCTGGCCGCTGGCTCTGCAGACTTCCACTGCAGGATTTTTTCGGCCTACATCAAGGACATTGAGGAGAAGCCCGGCCCAACAGCTTGGGGGGCAAAGATGCCATTTGGGGAGATGTTGCTGGAGAAGAGGGACTGTGGGGGCTGGGTGCATGATGTCTGCTTCTCCCCCTCTGGAGACCGGCTGGCCTGGGTCAGTCACAATAGCAGCATCAGTGTCGTGGATGCAGCTCAGGGCAAAGAAGTGACGCGGCTCAACACAGTGtacctccctctcctcagcGTGCTGTATGTCAATGAGACTGAGATAGTGGGTGCGGGCCATGACTGCTACCCATACCAGTTCTCGTATGCAGGGCCAGACAAACTGCAGTTTGTGAAGAAGCTGGATATTCCCAAACAGAGTTCAAAGAGTAGCGTCCAGCTGTGCATTGTCGAGGGGGAGAAAGCCAAGGTGAACAAGTTCAGTAGTGTGGGCCTGGATGGAGCCATGGTGGTCTGGGATTTCAAAGTAAGCTCTGCTAGTACTGGTTAAGACATTGCAAATGTCTGATCTTCCACTGTGCACACTCAAGTCATGTGCACATTGCAGTTACTTGGCTGTAGTTATCATGTGAAACAGAGATAGACATCCCCTGGCAATAGCCAGTACTTGGAATGAACAGAAAATATGGGTCAGTGTAAACACAATAAACCCCCCTTGAGAAGAAACCTGCATTCTCTTGCCTCTTGCACAgagtgtaaaatatttaaaacgaTACAGATATGCTAATGAGATGTAATACTGCACTGCTGATGCACAGAAAGTTGTTTGGGGGTTGGGAGTATTCTGTGCACGGTACTGTTTCAGAACAAGATGTGTACTGCAAGTGTCAATAGTAATCCTTCTTCTGCTGAAAATATCAAAAgtgatcctttttttttctttcctagcACTAAAAATTGTGAAGATGAAAATCACTTTATTTGCTGTATTCCTGAACTGACTGCTACATTCTCTCATCAGATGCTGTGTATATAAGCATTTATACACTGAATCACCAACacatttcataattttgaaaatggatcCTTCATTTCTTTATAATCACACTGCAAGTATGGATACGCTATACCACAGATTCTAGTCCTGTCTGGAGTTACAACAAAGGAAAATGTCTATTCTATTCAGACAGACTATAGGTTACAGttgatttacatttgatttctaagtttgtgtgtttttcaagtaaTTAGCATAAAATTGAACCCAGGCTTGGGGGGAAGGGAGTGATTGTTCGGTAAAGTGCTGTCCTAAAAACAACACCCTGCACATAGCATAGCACTACTGGTCCAGTCCATTACTGACATGGAGACATGCTTGTCTCATTACAGTCagtaatatagtatatagtattgtatttttttaataattcaacattttttatataaggtgttaatgaacaacaaaataaaataactataaatattacattttgggCCTATTCTTAAATCACATACCATAGAGGTAATTGCTCATCTAaagacaacaaatatatatataatttgagtCTTTTGGTGTATATTTTCCAATCCAGTTGTATGacactaaataaaattaagttttgGTA

Function

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53241 lncRNA upstream 9194 23784408 ~ 23831400 (+) True G42705
TU53136 lncRNA upstream 279934 23554672 ~ 23560660 (+) True G42619
TU53059 lncRNA upstream 977612 22861815 ~ 22862982 (+) True G42554
TU53014 lncRNA upstream 1148378 22691932 ~ 22692216 (+) True G42518
TU52982 lncRNA upstream 1270513 22514864 ~ 22570081 (+) True G42488
TU53336 lncRNA downstream 150364 23997794 ~ 24003887 (+) True G42779
TU53337 lncRNA downstream 159923 24007353 ~ 24007850 (+) True G42780
TU53360 lncRNA downstream 393839 24241269 ~ 24331854 (+) False AMCG00013198
TU53362 lncRNA downstream 417801 24265231 ~ 24331854 (+) False AMCG00013198
TU53377 lncRNA downstream 563412 24410842 ~ 24411044 (+) True G42816
AMCG00013182 mRNA upstream 15309 23808243 ~ 23825285 (+) True AMCG00013182
AMCG00013183 mRNA upstream 38530 23775946 ~ 23802064 (+) True AMCG00013183
AMCG00013175 mRNA upstream 99997 23736663 ~ 23740597 (+) True AMCG00013175
AMCG00013174 mRNA upstream 105290 23722157 ~ 23735304 (+) True AMCG00013174
AMCG00013179 mRNA upstream 150424 23688818 ~ 23690170 (+) True AMCG00013179
AMCG00013181 mRNA downstream 1745 23849175 ~ 23864196 (+) True AMCG00013181
AMCG00013186 mRNA downstream 40154 23887584 ~ 23901607 (+) True AMCG00013186
AMCG00013188 mRNA downstream 104616 23952046 ~ 23961957 (+) True AMCG00013188
AMCG00013187 mRNA downstream 125652 23973082 ~ 23984425 (+) True AMCG00013187
AMCG00013195 mRNA downstream 175401 24022831 ~ 24116258 (+) True AMCG00013195
TU52922 other upstream 1594804 22242429 ~ 22245790 (+) True G42453
TU52772 other upstream 2353786 21426660 ~ 21486808 (+) True G42344
TU52771 other upstream 2353786 21484907 ~ 21486808 (+) False G42344
TU52773 other upstream 2353786 21485321 ~ 21486808 (+) False G42344
TU52756 other upstream 2421807 21370843 ~ 21418787 (+) True AMCG00013126
TU53407 other downstream 900062 24747492 ~ 24749395 (+) True G42846
TU53419 other downstream 920994 24768424 ~ 24770148 (+) True G42858
TU53706 other downstream 1672737 25520167 ~ 25521681 (+) False AMCG00013236
TU53847 other downstream 2407549 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 2677396 26524826 ~ 26540049 (+) True G43263

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050371 False 1603 mRNA 0.44 10 NC_007114.7 36275722 ~ 36284282 (+)
grasscarp (Ctenopharyngodon idella) CI01000046_06970061_06977533.mRNA True 1396 mRNA 0.49 10 CI01000046 6970061 ~ 6977533 (-)