RNA id: AMCG00013184


Basic Information

Item Value
RNA id AMCG00013184
length 5892
RNA type mRNA
GC content 0.37
exon number 11
gene id AMCG00013184
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 23826609 ~ 23839146 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCAGCCATCCAAGGACTGGGAAAAGAAAAGCGAGGAGTTTTGTGTTAGTGTAAGGGAAGAAAATACAGCCCAAAAAAAGACGAGACAGCCTCCAACGACTCGGATCTGATCAGAAGGTAACCATGGCGTCTGGCAGCACGAGCAGTGATGAAGAGAGGAGCCTCCGAGAGTGTGAGCACTATGTGCAGAAACACAACATCCAGCAGCTGCTCAAGGACTGCATCGTCCAGCTGTGTACCTCTCGCCCAGACCGGCCCATGGCCTTCCTCAGAGAGTACTTTGAGAGACTGGAGAAGGAGGAGGCAAAGCAGATCCTCAACCAGCAGAAGTCTAACTCGCGCTCGGACTCGCGCGAGGATGAGATCTCCCCCCCCACGAATGCCGTATTGATGGCACGCCAGCGCCGCGGGGCCTTCAGCGCTGAGGTCTACACCGAGGAGGACGCCGCCTCCTACGTCAGAACGgttaTTCCTAAAGACTACAAAACCATGGCTGCCCTGGCGAAAGCAATTGAAAAGAATGTGCTGTTTGCACATCTTGATGATAATGAGAGGAGTGATATATTTGATGCCATGTTTTCAGTCACCTATATTGCTGGGGAGACCGTAATTAAACAAGGGGATGAAGGTGATAACTTCTATGTCATCGACCAAGGTGAAATGGATGTCTATGTTAACAATGAATGGGTTACCAGTATTGGGGAAGGAGGCAGTTTTGGAGAGCTGGCATTGATCTATGGTACCCCCAGAGCAGCAACTGTCAGAGCGAAGACCAATGTGAAGCTGTGGGGCATTGACAGGAACAGCTACAGGAGAATATTGATGGGCAGTACTTTGAGGAAGAGGAAGATGTATGAAGAATTCCTTAGTAAAGTGTCAATTTTAGAGTCTTTGGATAAGTGGGAGCGCTTGACAGTGGCCGATGCCTTGGAACCCGTGCAGTTTGAGGATGGGCAGAAGATTGTGGTTCAGGGAGAACCTGGGGATGAGTTCTTCATTATCCTAGAGGGTACCGCAGCCGTGTTGCAGCGGAGGTCAGAGAATGAAGAGTTTGTGGAAGTTGGAAGGCTGGGGCCTTCAGATTATTTTGGTGAAATCGCCCTGTTAATGAACCGCCCCCGCGCTGCCACTGTGGTCGCCCGTGGGCCTTTGAAGTGTGTGAAGCTCGATCGACCTCGGTTTGAACGCGTTCTGGGTCCGTGTTCAGATATTCTCAAGCGAAACATTCAACAGTACAACAGCTTTGTATCATTGTCTGTCTGAGGATTACTAGCCCCTCCCCTTAATGCAGGGTCCACCAATGCAATCCGCtttaatttttctattttttgtttctttcacattttatgaCACCCAGCTGCCCACCAGCATTACTgctttgtctgtctgttcttATGTCCCCAGAGCAACATATAACATTTATGTGCTTCATATCCTTCCACACTGCAgaatttctttaaaacagtGTCCCGAAATCACTTCTCATACATGTGCAGATGAGAATAGTGTCCGATCTGTTTGAGTTGCTTTGAAAGAGTGATATTGCTGTATGAAGCTATATTAGAAAAGGTAGAAATAGAACGAAAAAGCAGATATTTTAAACTTGTTCAGTGTTTCAAGcctaaaaaaaaggaaaaaaaagagagaaaaaaaaactttttaagaATCTTTGAAGTAATATTGCTGTTTAGTATTTTGAAATTTGGCATATGTAGCTAAAAGCAAATGAGCAGATGtctattcatgttttataataGTTTATTTCAAGGGTACTAGAATTTAATTGCCACCAGTATGACCTTGGTTACATgctctgctgttttattttaatagttgcACACATATATAAGAGGTTTCTATGAccataatcaatattttttgcACACTTCCagtgtaaaatgttaatttgcacCTGCTAGTTTTCATTGCTGAATTGCATCTCAATATTGTACTAAAGTCAGAAGGAAACAGTTTTGTCATCAAAATGGATCgactgtatgttttaaatatccCCTTGCCCAGAtcatatttagctttttttgttgttctttcctTCCAACATGTTACCTGCTGTACCATATCCACAGCCCCAGCCCAAGAGAAAAAGGGTGTCAGATGTAAACCtctgttgtatgtttttcatttctagCTTGAGAGTTAGAACTGAACACAGAATATTGCAGGTGTAAAATATATAGCTACCATGCTAGTGCCAAATATGAAATGATGGTTCTTAGCAGTGATGATAATTGAGAATCGAATAGAAACGAACAGTATATAAATCTATGctgtatttttcataaagaCAGAAGTCCCCAGATGTTTAGGTGAAGGGATGAAAACTTACTGTTAAGAAGTGATCAGAGTCCTGTGAGCAGAAGGAATGGACATGTTATTGTGCTTCTGTGAATTTTGCATAAATTGGCAGGTTGACATGAAGATTAATTTATAAACTCTGACCAAGTAAATACAAGGGCTAGaggatgaaaaaaagaaaagaaaaaaagcaacccCAGACTTCTTGCATTGGCTACAATAAAATGGTTGTACACATGAAAAACTCAAGACTGATCCAGATTTTATGAAGGGCATAAGGAGGGGATTATTCTCTTCCTGTTGTTCCCTAAAGAAGGAAAAACTCATCATCGAgtcttaaatgtatttcagtatttacCAATTTTGTGTTACTTTTCTCAGTATGCACCAAATGATGAGCGGTTTTTATCAAATTCCACAGTTCTATTATGTATGTAATCATatatcctttattattattgttattattactactactacgtATAGAGTGATCTAGTTTAGGATTGTAGTTGGGAGTGACAGCAAGCTATAAGCAAGTCCGTGTAAAGTTgaaacgtttttttttaaaaatgcttatttttccataaatttattatattttaggtGCCCAGTGCCATGACTTTATTAAACAATGTTAGATCTGTTGTTGGCAAAGAGGAAGTTACAGTTTGTAGTTGTGTCATGTCTGTTTGTCATgggtcaattattttttttccttttttataaatatatatatatatttattcatgattgacttattttattaaaattgaataatcTGGAAGTGTTCTGAATATTTTCTCTCCAGTAATTTCATAAATGACTAGATAGATTCaaactgtgaaatgtatatttaaacaaaattataaaaaaaagtccTATCCCACAAATAGAAGTGGGTGTGTGTCTTAAATCATTGAAAGTGGACAGTGTGTTTGTTACATGCTGTATAAGCTGGTTCTCCATTCAAAACTCAAGTACAGTATTCTCTTGCCAGGAAGCCATGTATTTGCAAAcaaccattttgtttaaaaaaaaatgttttagtaatCTTTCCTATTATTTTTGACCATATTAAAGCTGAAAGAATAAAGAGTGTTTACCCATAGATTAAGTCAGGTTTATCCATAGTTAAgtacaacaaaaaaagtaaaaaatattttgttatacaaGGTGTGTGCTATAGCTTTGTGAGGCTGTCAAATCGGTTTGTAAAAATAGGGGTAAACTAATTAGTTTAGCATTTATCAAATGAATCAATCTATTGTTGCTTCTAAAATGTGAATGCTgttgtaattttgaaaatggaaGTGATACAAGTTGGAGCTGATGGATGcataattgaaaatgaaaatcttcTTGAAGAGACTGAAAGGATGGCAACACCTGGTATATTTACCCCAGTAGATATAATGAATGTCTctcaaaacaaatctcaaagtataaaataaacttgCGCACAATATTTTTGTGAACACAGCAATCAACAAATTTCGTACTTTAATTTTATCACCAGAATTGTGGAATATTTGCAGTCCTGGCTGTGATACTTGTTTGACTTATACATTTacctcctttttattttaaaatccataagttatatattgaaaattttagaaaacaaattattgaaaAGATTAGCTTTTATTCCTctacagtggggaaaaaaaaacgtttgattttccttttatttttattttttcggCTTGCTATTCACTCCCAGTCTTTATTTACTTACAGGATTTTCTGATTCACCAGCCGGTATGTTTTTGAGTTCAATATTAATCGCAGTTATAGCTTTGCCAGTCTGTGCAATCCAAGTATGTatgtacaaaaagaaaaatcgacATAGTTTGCCTTAGCTAATGTAACAGGGCTTAGAAACTCCTGCTAGCCCATCCTTCAGCAACTTTGTGAAACCTGCAGTCCTGAGAGCTGCTGGCGATCCGAGGACCATTTTTTCTATTGTTATCCAATGACTGTATAAGGTTTGATTTACTGTATGTGCTAAAATTATAATCCTTTTGGTATAGATTGTCCTAATGGCAGGTCAAGCAATAAAAAGATTTAAATTCTTAAGTCTAGacagtctttatttattcatttcaaatttGTTTATTGCTTGTCCAATAAATGGCCTTTTAAAACACTCAAAGTccctcattttattttccataatttctTCCAAAGTCCTTTCATCCCTTTTTGTGATGGAAGTTTGTAATACTTTTGCAGACTTCAAATATAATCATTCATTGTGTAAGTGAATTGTATATATGAACTTCTCCCCATAAAGAGTTATGTTAAACTTGGACTATTTTAACATGATGTGTAGATCTGAATGTTGAATTAAGAGTCACCAGCTCCATTTGATAGTCTGCCCATTGGAAACAAGGTGGGGGCTACAGTATGTAGTTGTATTGAAGTGTGGGTAGTTAGTGCTTGTCATTCCCACTAGAGGGAGGTATAATTCAAGTGATCAATGAGTTTCCATTCTTGCTCTCTTTCAATGTATATCAAGCTTCAGATATTACATTAATCCAGCCATTCTGcaattagaaatgtttaaaatgtgttcaagaTGGACTGGCTCTGCATTGAaagatttaagaaatatatgGTTAATTGGGGACTTAAATTATCTTCAATATTGCATACCTTTAAGAAAAAGTGATTATGTATAACCCGGACAGATTTAtgaattttttaattaaatataaaaacaaaatagtgaaTCGCCTGAGACCATCAAGAAATAAGAGATTTAGAGATTCCGGCTTCATAATACCCAGCCTTTTTGTCTTTGAGatttttgtttgcctttccATAATTTCATTAGATGACTTCAGAAATAGAAAAGACTTAGAGTTTATACACACACCGATGCAGTCCCAGTAAACTATATTAAATGACTCCAAGCAGTTTATTTTCCAAGACATATTTTGTCATGTTAATGGTGAGTCATATGAAACATGTATCAGATTGCCTTCTCCATGTTGACCAAGCAGTCTGGATGTAATGGGGGGGTTATTCTgttctttaattttgtttgtttaaccaTGGAAAAGCCCATACATAAGCATCTTAGCTGCAAGTCCTTTGGACAGAAAATACCTCAGAGGAAAcatcataaaagaaaacaaaggccATGAAACGCTGCACCGTTGTTAATGAGCCCTGATGGTGATAGTAAAGGTAGGTGATCATGAAACTTGTTTTTCCAGGTGGGTGGGTTTGAGTGTCATATTTCAATTAAGTTTTACCCTGGTCCTCGGTTGGATGAACCAAAAGAGTGAATTTCACCCTGCATTGATTGCTAATGAGATTTTGATGTGAATGCAGACTTTGCAAGGTGTAGATTACAGTTGTTGAGAACTTACTaacaatactgttttattttactttacactCGGCACTTTAGTTTGGTCAAAGGTACATTtccttttccacatttttcGTCTTAAATGGGGTTTGTTCCAACTGGTGGTAAAGATGGAATAACTCCATAGCCAACATCCTATTGGCCTGTCGGCAGTGTCAGCATCTCTCTGCACTGGAATGTGTTTGTGGTcatc

Function

GO:

id name namespace
GO:0045859 regulation of protein kinase activity biological_process
GO:0005952 cAMP-dependent protein kinase complex cellular_component
GO:0008603 cAMP-dependent protein kinase regulator activity molecular_function

KEGG:

id description
K04739 PRKAR; cAMP-dependent protein kinase regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53237 lncRNA downstream 47259 23778925 ~ 23779350 (-) True G42704
TU53062 lncRNA downstream 1010240 22816156 ~ 22816369 (-) True G42557
TU53058 lncRNA downstream 1120272 22706066 ~ 22706337 (-) True G42553
TU53044 lncRNA downstream 1251782 22574558 ~ 22574827 (-) True G42544
TU52919 lncRNA downstream 1676817 22149581 ~ 22149792 (-) True G42450
TU53294 lncRNA upstream 6308 23845405 ~ 23847477 (-) False G42749
TU53287 lncRNA upstream 62346 23901443 ~ 23901920 (-) True G42743
TU53312 lncRNA upstream 73694 23912791 ~ 23917024 (-) True G42760
TU53359 lncRNA upstream 381554 24220651 ~ 24222738 (-) True G42800
TU53483 lncRNA upstream 1040544 24879641 ~ 24882055 (-) False AMCG00013204
AMCG00013176 mRNA downstream 53576 23758274 ~ 23773033 (-) True AMCG00013176
AMCG00013178 mRNA downstream 70008 23744746 ~ 23756601 (-) True AMCG00013178
AMCG00013177 mRNA downstream 105097 23710700 ~ 23721512 (-) True AMCG00013177
AMCG00013168 mRNA downstream 263273 23554672 ~ 23563336 (-) True AMCG00013168
AMCG00013169 mRNA downstream 333775 23486345 ~ 23492834 (-) True AMCG00013169
AMCG00013185 mRNA upstream 27543 23866640 ~ 23882268 (-) True AMCG00013185
AMCG00013190 mRNA upstream 63821 23902918 ~ 23912316 (-) True AMCG00013190
AMCG00013191 mRNA upstream 78103 23917200 ~ 23927578 (-) True AMCG00013191
AMCG00013189 mRNA upstream 102614 23941711 ~ 23948688 (-) True AMCG00013189
AMCG00013192 mRNA upstream 146030 23985127 ~ 23995256 (-) True AMCG00013192
TU52819 other downstream 2309432 21336217 ~ 21517177 (-) True G42371
TU52837 other downstream 2311916 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 2411645 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 2450846 21337067 ~ 21375763 (-) True G42381
TU52823 other downstream 2466502 21350660 ~ 21360107 (-) True G42375
TU53293 other upstream 4986 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 1043022 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 1186779 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 1236296 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 1324886 25163983 ~ 25166758 (-) False AMCG00013223

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000047_06200292_06209564.mRNA True 1274 mRNA 0.55 11 CI01000047 6200292 ~ 6209579 (+)