RNA id: AMCG00013185


Basic Information

Item Value
RNA id AMCG00013185
length 2855
RNA type mRNA
GC content 0.48
exon number 11
gene id AMCG00013185
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 23866640 ~ 23882268 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTTATTTGAAGAAACCAAACTTCATCGTCATCCTGGCTGATGATATTGGCTGGGGAGACCTGGGGCTGAACTGGCCCAGGAGGAGCCACACCCCTCTCCTCAACCTCCTGGCACAGGAAGGCATGAGATTTACAGATTTTCACTCGCCTGCATCCACTTGCTCCCCGTCCCGAGCTTCCTTACTAACGGGCAGACACGGCCTGCGCACTGGGGTGACACACAACTTCGCTGTGGGCTCCACAGGAGGGCTCCCCCTCAACGAGACCACCCTTGCTGAGGTCCTGCAGGGGGCCGGCTACTACACAGCCATGATTGGAAAATGGCATTTAGGGCATCGTGGCCCATATCATCCCAGCCGCCGCGGTTTTGATTACTATTATGGAATTCCGTACAGCAATGACATGGGCTGCACAGACACGCCAGGCTATGACATCCCAGAGTGCCCACCATGTGTCAAAGATCCAGCGAAAGAGAGTGATGAGCACAAAGACTGCTACTCCACTGTGGCACTGCCACTGTTTGAGGACCTGCAGATTGTGGAGCAGCCCCTGGACCTGTGGACCTTGACAGAGAAGTACACACAGAAGGCAGTGGACATAATTCACAAGGCCAGAGAAGTTGGCAAACCCTTCATCCTGTACATCGCCCTGGCACACATGCACGTCCCACTGTCCCCAGCCTCCCATCATGGCAATGTATCCCTGGAAGATGTCTATGCAGCCAGTCTGCAAGAAATGGACAATCTTGTTGGTGCGATAAAAAATGCATCTGATGCCACTGCTAAAGAAAACACACTCATCTGGTTTACTGGTGATAATGGCCCTTGGGACCAGAAATGCCAGTTCTCAGGAAGTGTGGGCCCTTTCTTAGGAAGGTGGCAGTCAGACAGAGGTGGGAGTTCGGCGAAAAAGACAACTTGGGAAGGAGGGCACCGTGTCCCCACTATTGCATACTGGCCAGGAAAGATTCCAGCCAATGTCACTAGCAATGCCCTGCTCAGTGGCCTGGATATCTTCCCCACTGTGCTGTCCCTGGCCGGGGCCAGCCTGCCCCCTCACAGACACTATGATGGCATTGATGTGACCAAAGTCCTCTTCCACCACTCAGATACCGGACACAAGTGTCTTCTCCACCCCAACAGTGGAGCAGCCGGACAGTTTGGGGATCTCCAAGCAGCCCGGCTGGAGCAATACAAGGCGTTCTACATTACAGGTGCTGCAGTGGCCTGCGGTGGGCAGAGGGGACAGGAGGAGCTACACGACCCTCCTCTGATTTTCGACCTTTCCCGGGATGAGGAGGAGGGCAGCCCACTGGACAGCAGCCATGCGGAGTACAAGGCTGTGCTGGAGATggtggagaaagagagggaggcagtGCTGCAGGACATTGCCGCGGACAACGTTTCCCAGGCCGACTATGCCATTGACCCGTCGGCCGCACCCTGCTGTGACCGCAGTCACCCAGCCTGTCGGTGTCGGGGCTAAGGGCTTTACATCGCCCTGCATCAGACACTGTGGTTGTCTGGAGGAGCCCGCGGCATAGCGGGCATACAGCACACAGaaccaaaacatttcagtcacGGAGGTTTGTCATCACACGACCCAGGATGATTGGTTGTTCGCAAAGAAACCCTGTGGGATTGATTCACTTACTGAACAACTTGTTCCTAGTGTAGCCAGACTGCTAGCTCTGTGTGGGGCCACAGCTGGGCAAATTCTACCGATAAAAAAGATCCTTCCAGTGAAAAAGGGAGAGCCAGCCTCCCTAGCTTCCTATGAACAGCAATACAGGAGATGTTGAGATTGAGTTGGCTGTGTCAGGAACAGGCGAAATAtggttgtttttgctgttgtctTTAAATTAGCAAATGGCCATTGTTTATATAGCTCAACCTTGGTTACACTGTAACCAATCAATGTGACAAACAGGTAACACATTGGcactgtttattaattattagcCGTGGAATAAGATAGTAAGTTCATCTTGTACTTTTGCCTTGTATgtgttcttttgtctttttatccCATAATTTGGCATCCCCTTCGTGTGAATAGCAAGGAGAAGGCCGGGGCAGAGTGAACAGGGAAAAGTACACTTGTGAATGTGGTTTTAGTGAGGTAATGACTTTGTGTCTGGAGGCCCTGTACTTTGATAAATGGTTTCAGTTGAATCAATTCAAAAAGGTGTGGCTGTTGCAGTTTAGCAGATGCAGTGTGCTGGAGCAATACATTTGCAtgtgattgtattattaataacagtttAAGGTTATTATATTAGCTGAATTGTTCATACAGTTTCTCTTTaggtaatgttttatataaattacattcacAGGTCATCCTGACataataaattcattttttttcctacagAAGTCCAGATTGCTTTCAAAGTTAGCACAAACAGATCTCAACCATAGATTTTTCAAGGATTGCTGTTGGCGTCTATGCATTGTAAATCTCtgcagaaacaaaattctcAAGCTGCACTCAGTTTATAGATGACTGCTTCAAGGCTATATATCTGTTGTACTGAAGACGTCCTTGACAGAGCTAGATAAGACCAGAATCATTGTCTTGGTCTATTTTTACACCATTCCATTGATAGCCAAAAGTAgtttcctttttcagttttcatttaaataaattaatattatattttaagtgttaCACCAAATCTGAGGGCTGAATGAACTGAAATATCTTcggggggaaataaaacatgaaccCATACCCACTAAAGATGTAGGGTTCTAAATTTTAAAAAGAGAGTGAGGTGAGGTGGTAGGTGGCCCCACAGCCATTCAAATTAAGTCAAGGTCTAAGATTCTTGCATAGTATTCTGTTCA

Function

GO: NA

KEGG:

id description
K12381 ARSG; arylsulfatase G

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53294 lncRNA downstream 19163 23845405 ~ 23847477 (-) False G42749
TU53286 lncRNA downstream 27494 23828046 ~ 23839146 (-) False AMCG00013184
TU53237 lncRNA downstream 87290 23778925 ~ 23779350 (-) True G42704
TU53062 lncRNA downstream 1050271 22816156 ~ 22816369 (-) True G42557
TU53058 lncRNA downstream 1160303 22706066 ~ 22706337 (-) True G42553
TU53287 lncRNA upstream 19175 23901443 ~ 23901920 (-) True G42743
TU53312 lncRNA upstream 30523 23912791 ~ 23917024 (-) True G42760
TU53359 lncRNA upstream 338383 24220651 ~ 24222738 (-) True G42800
TU53483 lncRNA upstream 997373 24879641 ~ 24882055 (-) False AMCG00013204
TU53601 lncRNA upstream 1163110 25045378 ~ 25051849 (-) True G42993
AMCG00013184 mRNA downstream 27543 23826609 ~ 23839097 (-) True AMCG00013184
AMCG00013176 mRNA downstream 93607 23758274 ~ 23773033 (-) True AMCG00013176
AMCG00013178 mRNA downstream 110039 23744746 ~ 23756601 (-) True AMCG00013178
AMCG00013177 mRNA downstream 145128 23710700 ~ 23721512 (-) True AMCG00013177
AMCG00013168 mRNA downstream 303304 23554672 ~ 23563336 (-) True AMCG00013168
AMCG00013190 mRNA upstream 20650 23902918 ~ 23912316 (-) True AMCG00013190
AMCG00013191 mRNA upstream 34932 23917200 ~ 23927578 (-) True AMCG00013191
AMCG00013189 mRNA upstream 59443 23941711 ~ 23948688 (-) True AMCG00013189
AMCG00013192 mRNA upstream 102859 23985127 ~ 23995256 (-) True AMCG00013192
AMCG00013193 mRNA upstream 120458 24002726 ~ 24003841 (-) True AMCG00013193
TU53293 other downstream 19163 23844083 ~ 23847477 (-) True G42749
TU52819 other downstream 2349463 21336217 ~ 21517177 (-) True G42371
TU52837 other downstream 2351947 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 2451676 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 2490877 21337067 ~ 21375763 (-) True G42381
TU53481 other upstream 999851 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 1143608 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 1193125 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 1281715 25163983 ~ 25166758 (-) False AMCG00013223
TU53711 other upstream 1633812 25516080 ~ 25516963 (-) True G43070

Expression Profile