RNA id: AMCG00013190


Basic Information

Item Value
RNA id AMCG00013190
length 1651
RNA type mRNA
GC content 0.55
exon number 8
gene id AMCG00013190
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 23902918 ~ 23912316 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACCCAGACGAACGGTCGACACGAGACCATTTCAGCAAGGGCGTGCATGTGCTGTATGAGCGACACCTGAGCAGTGTGTGTGCGATCTGTGACAGGATGGAGCGGCGAGCTATGGAGCAGTGTGGAGAGCTGCAGGCGGCTGCGGTGTCTGTGCGCTGGCTAACCACAGGCACGCTATGCAGCATCTGCGTGTGCAGCCTCATTTTCCAGGAGCCGGCTAGAGAGAGGATAGGTGAAATGCAGGTGATCCAGCATTCGCCAGAGAAGCTGCAGGTTGCTCTGGTCTCCTCTCGCCGGGACCTGGTGGAACGCTATCAGAAGTTCAGCCGGGAGGAACGAAGGCTGCTGGAAGAAGGGCTGTACCCTGACAGCACCTTGTTTGGGCCCATCACCGTGCACTCGGACTCTGATTGGATCCGCTCGCACCCGGAGCCCCCGCAGGATTTCCTGGAGTTCTACAGCAACCCCTACCGCAGCACGCCCGTCAAAGGCCGCAGCACCGTCTACATCCAGACTGTGGGCTCGTTTGGCGAGGGGGATGCGGTGTCTCGGCAGTATGTGTGTTGGCTGCAGGAGTACTGCGAGGCCTTCTACTACGGGTTGGCCGTGAAAGTCCTGGAGCCTGTCCCCGTGTCAGCCACCGGCTGTGCCTTCAGAGTCAATGACAGCACTCGCAACCTGCAGATACATGCTGGTGATTTACTGTGCTATTTGAAGAAGAGAAAGCCCAAAGATGCCTTCTGCATTGTGGGCATCACCATGATCGACCTTTACCCCCGAGACTCCTGGAACTTTGTGTTTGGCCAAGCGTCCCTCACTGAAGGAATGGGCATCTTCAGCTTCGCCCGGTACGATGACAACTTCTACAGCAGGAGCTACAAAGGGCGCCTGTGGAAGGGCTGCAAGCTGTCCCCGGGGGATTACTCTGTGTTCAGTGGCTACTACATACCCCCCATCACCAGCTCCCTGCTCCTGCGCTCCTGCAAGACCCTGACCCATGAGATTGGCCACATCTTTGGGATAAAGCACTGCCAGTGGCTGAAGTGTGTAATGCAGGGCTCCAATCACCTGGAGGAGTCGGACCGCCGCCCCCTCGACCTCTGTCCTGTGTGTCTCCGCAAACTGCAGGCTGCCACGGGCTTCAAGATGGCAGAGCGGTACAAGGTGGGCTTTGCTGCGATGGATTGAAGATGGATCGTCCAGCGGGGAACGAAGATCAGCCACAGATTCGGGCCCTCCATCATTCAAACCCACAGAGGCATTCGAAGAGTCCAGACAGTGGCTGCGGAAGTGCCTGTGTGTGCTGGAGGATGAGATCTTTTAACCTTCCGTCATGCATGTTCTACAGCAGGgggccaaccctgttcctgcaGGGTGTACAGGCTTCTCAAAATTATCATTACCTTGAACACAAGGTAACTGACTAATTAAGCCCACTTCTTGAAACAGTTAAGAAGTTAATGGTtaatggataaaacaaaaaacaggagacactgtggctctccaggaccagtaAGGTTCCTAGTAGTCGGTCACACAATGGTCAGTCATCACCTTCAGCGATGCAGAACAGCCAATGACTGTCATGGCaccatacaccgatcagccataacattttgaccacctgcctaatattgtgtgggTCCCC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K06974 amzA, AMZ2, AMZ1; archaemetzincin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53287 lncRNA downstream 998 23901443 ~ 23901920 (-) True G42743
TU53294 lncRNA downstream 55441 23845405 ~ 23847477 (-) False G42749
TU53286 lncRNA downstream 63772 23828046 ~ 23839146 (-) False AMCG00013184
TU53237 lncRNA downstream 123568 23778925 ~ 23779350 (-) True G42704
TU53062 lncRNA downstream 1086549 22816156 ~ 22816369 (-) True G42557
TU53312 lncRNA upstream 475 23912791 ~ 23917024 (-) True G42760
TU53359 lncRNA upstream 308335 24220651 ~ 24222738 (-) True G42800
TU53483 lncRNA upstream 967325 24879641 ~ 24882055 (-) False AMCG00013204
TU53601 lncRNA upstream 1133062 25045378 ~ 25051849 (-) True G42993
TU53604 lncRNA upstream 1167222 25079538 ~ 25082029 (-) False G42993
AMCG00013185 mRNA downstream 20650 23866640 ~ 23882268 (-) True AMCG00013185
AMCG00013184 mRNA downstream 63821 23826609 ~ 23839097 (-) True AMCG00013184
AMCG00013176 mRNA downstream 129885 23758274 ~ 23773033 (-) True AMCG00013176
AMCG00013178 mRNA downstream 146317 23744746 ~ 23756601 (-) True AMCG00013178
AMCG00013177 mRNA downstream 181406 23710700 ~ 23721512 (-) True AMCG00013177
AMCG00013191 mRNA upstream 4884 23917200 ~ 23927578 (-) True AMCG00013191
AMCG00013189 mRNA upstream 29395 23941711 ~ 23948688 (-) True AMCG00013189
AMCG00013192 mRNA upstream 72811 23985127 ~ 23995256 (-) True AMCG00013192
AMCG00013193 mRNA upstream 90410 24002726 ~ 24003841 (-) True AMCG00013193
AMCG00013194 mRNA upstream 110061 24022377 ~ 24023420 (-) True AMCG00013194
TU53293 other downstream 55441 23844083 ~ 23847477 (-) True G42749
TU52837 other downstream 2388225 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 2487954 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 2527155 21337067 ~ 21375763 (-) True G42381
TU53481 other upstream 969803 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 1113560 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 1163077 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 1251667 25163983 ~ 25166758 (-) False AMCG00013223
TU53711 other upstream 1603764 25516080 ~ 25516963 (-) True G43070

Expression Profile