RNA id: AMCG00013192


Basic Information

Item Value
RNA id AMCG00013192
length 3109
RNA type mRNA
GC content 0.60
exon number 14
gene id AMCG00013192
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 23985127 ~ 23995256 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGACCTCAAGATCCTGTTTCCGGGTTTGCAGCTTCCGGGTTGTGTCAAGTTGACGCGTCAACGATGGCGGCGGTGCCAGCTCAGACACTTCGGGTCTCCGAGATCAGGGACCCGGCGGCGCTGTTTGAGCGCTACAGCACCGAGGAGATCCGCGGGATAGAGCGCCGGGTGCGGGGGGAGATCGAGCAGAAGAAGGAAGAGCTGCGGCAGATGGTGGGGGAGCGCTACCGGGACCTGATCGAGGCGGCGGACACGATCGGCGAGATGCGCCAGTGCTCGGAGAGCGTCGTGCGCTCCATCCAGGACATGTATCGCTACTGTCACCGACTCAAACAGGGGAAGAGCCCGGGCCCAGCTGTCAGCAAACTGGAGAGTCAACGCCAGGCCCAGGAGAAGTTCAACACCATGGCAGCCCAGATCAAGCTCCTGCTAGAAATCCCAGAGCGGATATGGAGCGCCATGGAGTCGGCCCAGTACCTGCGTGCCACCCAGCTCTACCTGCTCTGCTGCCACCTGCACAGCCTCCTGCACCTGGAGGCCAGCGGCCCGCACTACAACCCCGTTCTCACCCGCTTTCCCATCCTGGTGCGCCAGGTCGCAGCGGCCGGGCATTTCAGGTCTACCATTCTCCTGGAAAGCAAGTCTCTACTGAAGGGCCGCGCAGTTTCCGACCAGGCCATAGCCGAGGCACTCGTGTCCACTATGCTTCTGGAAGACAGCTCCCCACGCCAGGCCCTTGCTGACTTCCTATTGGCCAGGAAAGCCTCCATCCAGCAGCTGCTCAACCAACCACAGCATGGTGCTGGTATCAAAGCCCAGGTGTGCTCTCTGGTGGAGCTGTTGGCCACCACCCTGTACCAGGCCTATGCCGTGTTCTATACCCCTCCGGATGGCAAGCTGGCGGACCTGCCCCTGAGCTGCGGCCTGCTGTTCAGCACACTGGAGACCGTGACGGGCACTGCACCTGCAGGGAAAGGGTCCAAGGTTCTGCACCAGGAGATGAGCTCGGGCAGCTGGTTCAAGTACCTGCCCCCCTCAGTCAATGACTTCCAGCCGACTCTTAGGACCCTGGCACAGCCCATCCTACCAGAGCAGCTGAGAGACACGCTGCAGCAGTGGATTGACACGTGTAAGGAGGATATCCGCCTTGGGATCAGCAGTCTGCTGGTGTACATCAAGAGCCTGAAGGGCCTGGCGGGTATACGAGACGCTGTGTGGGAGCTGCTGACCAGCGACTCCATCAGTCAGCACTGGAGTGCCGTATGTCAGCGGCTGTTAGAGCGTCCCCTGTCCTTCTGGGAGGACTTCCTGCAGCAGCTCTTCCTCCAGCGCCTACAGGCTCTTACTCAAGAAGGGATGGAGGGGATCTCGAGCAGCTCCAAACAGCTCCTGGCCTCCTCACTGCGGGAGCTGGAAGGGCAGTCTGTCCCCGGGGGCACCAGCAGGGTGGCACAATTCGAGGGTGATGTGGCGTCCTTTCTGTGGTCCGAATCCCCCAGTGACCTGCTGAGTGACGCGGCCTGGGTGAGCGTGTCAGGCCGCAGCCCCCTCCTGAAAAGTGGCCTGTCTATGAAGACCCATGGCCTGACCCCTTGCGTCCAGAGCTTCTGCTCCTCCCTGGACTCCAAGCTCAAGATCAAGTTGGATGACCTGCTCTCCTACTTGCCCTCCGAGAAAGCCCCCAAAGCATCCCCGGAGCCAGTCGTGGCCTCCTCCTTTGACCGCTACATCGACGCCAGCATGGTTGAGGAGACGCTGCGAGAGCACTGCGTGACCTGTGTGCGGAACGTCCTGTCCTCTGTCCGCTCAGAGCTGGGGGGTGCCCAGGATAGGCTGCACAGCTCTGGAGGTCAAGGACACGGTCGTCTCACTGCTGTGCTTTTCATGGCCAGGCTCTGTCAGTCCATGGGTGAGCTCTGCCCCAACCTGAAACAGTGTATTCTGGGCAAGCAATGTGGCCCGGATAACATGACGAGAGAGAGTTCGCGGCAAGGCAGGAAGCTGGGGAAAGGGGGTGGGGCCAAGGCAGTGGAGGTCAGCCCTGCCCGGGCCAGGTGGGCTGAATTGAAGGAGGAGCTTCTGTCCTGCAGCATGGAAGCCTATCGCATCTGGAGCTCCGCCCTCACCAAGGCTCTTGTGCACAACTTTGCGGCCACACTGCATGCAGACTCTGCAGGCTCCATCTTGGAAACGGCCACCAACTGGGACGAGCTGGAGATCCAGGAGGAGTCCGAGTCGGGGAGCAGCGTCACCTCCAAAATCCGCCTCCCTGTACAGCCCTCTTGGTATGTCCAGGCTCTGCTCTTCCACCTGTGCCTGGAGGTGAACAGGGTTGGAGGTCACGCACTGCCAAAGGTCACCCTGCAGGAGCTGCTGAAGAACTGCCTGGATCAGGTGGTCTGTGAGTACGAGAAGCTGACGCAGAACAAGCACAATAAGGACACTACATTCCCCATGACACAGAACCGggccctgcagctgctgtttgACTTGCGCTACCTTACCCTGATCCTGAGCTCGAGGCAGGAGGAGGGCAAGGCCTCCCGCTCCCTGCAGGACCCCAGgaTCCAGCATGTCTGTGACTCCCTGGAGGGCCACATTGACCCTTTCGACCTGGATGTCTTCACCCCACCGCTCAACGGCAACCTGAACCGCCTTTCCCAGAGGACCTCTGTTCTGCTCGGGCTGCTGACCGGCACAGAGAAGCAGTTTTCCTCTAGGGGTGCCAACGTCAACTCCCAGGAGCCCTACAACATCCTGCCCCTCGCCAGCAACCAGATTCGGTTCGGACTGCTGCCCCTAAGTATGTCCACCTCCCGAAAATCGGCCAAATCAGCCTCGCGGGGCTCGGACATCAGCAGGTCCCAGGTGGCACCTCCATCTGCTCCCCCAGCAGAAGATACGTTCCGGGCAGGAAGCCTGTTCAGACAGCTGGCATCACAGGAAGAGGAGCCCCCAGCCCCCTCCCTCTTCAAACTGGGCTGGCTCTCAAGCATGGCCAAGTGAAGCTTTTATAACCCACAGAGAAGATTTTAACCCGTGTACAAAGcttatatataaaactaaaataacaataaaaagtgtatatatatatatatatatatatat

Function

GO: NA

KEGG:

id description
K20288 COG1; conserved oligomeric Golgi complex subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53312 lncRNA downstream 68103 23912791 ~ 23917024 (-) True G42760
TU53287 lncRNA downstream 83207 23901443 ~ 23901920 (-) True G42743
TU53294 lncRNA downstream 137650 23845405 ~ 23847477 (-) False G42749
TU53286 lncRNA downstream 145981 23828046 ~ 23839146 (-) False AMCG00013184
TU53237 lncRNA downstream 205777 23778925 ~ 23779350 (-) True G42704
TU53359 lncRNA upstream 225395 24220651 ~ 24222738 (-) True G42800
TU53483 lncRNA upstream 884385 24879641 ~ 24882055 (-) False AMCG00013204
TU53601 lncRNA upstream 1050122 25045378 ~ 25051849 (-) True G42993
TU53604 lncRNA upstream 1084282 25079538 ~ 25082029 (-) False G42993
TU53605 lncRNA upstream 1084282 25079538 ~ 25082029 (-) False G42993
AMCG00013189 mRNA downstream 36439 23941711 ~ 23948688 (-) True AMCG00013189
AMCG00013191 mRNA downstream 57549 23917200 ~ 23927578 (-) True AMCG00013191
AMCG00013190 mRNA downstream 72811 23902918 ~ 23912316 (-) True AMCG00013190
AMCG00013185 mRNA downstream 102859 23866640 ~ 23882268 (-) True AMCG00013185
AMCG00013184 mRNA downstream 146030 23826609 ~ 23839097 (-) True AMCG00013184
AMCG00013193 mRNA upstream 7470 24002726 ~ 24003841 (-) True AMCG00013193
AMCG00013194 mRNA upstream 27121 24022377 ~ 24023420 (-) True AMCG00013194
AMCG00013199 mRNA upstream 409082 24404338 ~ 24408807 (-) True AMCG00013199
AMCG00013201 mRNA upstream 726303 24721559 ~ 24778233 (-) True AMCG00013201
AMCG00013205 mRNA upstream 805756 24801012 ~ 24830971 (-) True AMCG00013205
TU53293 other downstream 137650 23844083 ~ 23847477 (-) True G42749
TU52837 other downstream 2470434 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 2570163 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 2609364 21337067 ~ 21375763 (-) True G42381
TU53481 other upstream 886863 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 1030620 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 1080137 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 1168727 25163983 ~ 25166758 (-) False AMCG00013223
TU53711 other upstream 1520824 25516080 ~ 25516963 (-) True G43070

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051824 True 2059 mRNA 0.55 7 NC_007114.7 36409593 ~ 36419641 (-)