RNA id: AMCG00013198


Basic Information

Item Value
RNA id AMCG00013198
length 3889
RNA type mRNA
GC content 0.37
exon number 2
gene id AMCG00013198
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24241269 ~ 24331854 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCTCTAGCCCAAGAATTAGGAATGGAAAAGGAATTTGCATCAACACTAGCACTGGCTTCTCTTGGAAGAGCTCAGCAGGGCTGGTTGATGGATATGTGCTGGCACAGTACCATGGCTCAGAGAGCGGAGGGGAGACATTACATTTGGGCTTTGTCAGAACTTGCCTTCGAGCTGCACTTGCTTTCAGACTGCAGACCATCGAGGGAGGAGGGAAAGGTACACAGTTAACCCTTTCTTGAATCAGAATGAAAACTGAGGGAAACTAAGTATACGCAGCGATTTTTCTCTGAACATTTTCAGGAAGTTTCTGAAGATTTGCAAGAAGCTACTTAGCTACTATGAAGCTACTATGAGAGAGTGGGTGTGTTGGGGTGGTTGGAAATGCAGGAGATCCTGGTTATACtcctggtgttttattttttcaatcagCTGAATCATTACGTTTGTGACGGAGCTTTTAAGTCTTTGCTTAAGCCTGTCGAGTATTGTGTAGCCACTTCTATTATTTGGTTGTGATGAAGTATTGTGCAGCACAAGTAGATGTGTGCAATTGCAAATAAGGCATTCAACAACTGAACTAATGTCACAATCCctttcaagaaagaaaataaacgttGTTGAAAAGTGCAGTATGTCACTCATCAGGGACGAGCCTAAATAGAGATCGATATTCACTGTTGCTTCTAGGCTGACAGCAAAAACGAGGTGACTCATGTCCTCCAAATCTGTCTAGAATGATGTACGTTATGCCTCATCTGTTTCCAGTTTATTAGTTTTGGTGCAGGCATTTCTCCACCCCTGGCCTCCACCACCCAGATAGTAAGAGTGTCCTGCAAAGGGTCAGGTTTTCACCAAGGAATAGGCACTGCTGTCAAGTCCACAAGGTTGGAAAAAAACTGCTGAGCTGTGGCGTCTGCAGGGCAGGGCTAACATAACCTCTCACTGCAGATCATGTGAGAAGGTACTTACTGGACTGCAGCATATAATTGTGCTTACCCAACCCACATTACAACTAAATGATGAAACACAGCAACGAGCAGAAAGCTGAGCGAAAATAAacgtatttttaaacatttcagcagCAAGAGTTTCTGTGAACTCAAAAGGGCAGTTGCAAGCCTCACTGATAGACAAAGGGAGTtgttactatatttatttatttatttttctctttacaaaTATCTCATTAATCACTCACTGTAGTTGGTAGCAACGTGCCTGGCTCTCATTACTATTCACGTTCTAGCAGTGTGTGTAGGTGTCTGCTTTGCCATGATTAATGGTGGGAAAGGTGACTTCACCTGGGTCTTAGCAGGAAGTAAAAAATTCCTGAGAACTTACCAAGGATAACACCAGAATTATTTAATGATAGAACTGAACCGAAGGTGACCAATGGAAAATggcaccaaaacaaacaaacaaaaaaggttggGAGCCTTTTTCCCTGTCATGCGTTGTCTGTGTAGTAAAGCCATTATAAAACATTCTGCAGGTAAGTGGGTGACTCAGCTGTAAAACATTGTTTGAAACACAAGACACATTTGCACATAAACTGTTTTCCTGTAATGTTTCATCTATTATAACTGTGGACAAATAATGGGATACCACTATATTATTTCAGTATGTTGTGTTCTTATATtcctttaatataaatataaacagataaacacGTCCCGAAGGCCTGAGCCAAGTGTAAAACTctcaaaaaatatgtatttatcgAACTGACAACATGAAGTTCACCTAGACAAATTTGTATCACTGCAAATCTCAAATACTCAATCAGTATATGGAGGCTTTGAATTTTAACTTCCTACAGTTTGTGAGAGAatgatttacttaatttaagatTATTATAAGCTTAACTGAGATGTTTAACTTAACATACCTGTTTCTACTGGAGTCATAACCCCTGTGAGTGACTATTACAAACTCAACAAGTAAGACTGGTTTGTCCTCCTCATTTCCTCTGTACTGTACTTAATCAAATTTGAACGTCTTTAAGGTGTAATTAtggataaataaacacagacactctTCTCTTTAATAAATGCCTGTGCATCAGTTAACCTTCCCTCTGGCTATTGCTCTGCTGAAGATAGGCGGtattcacaaaatgaaaagcGTCTGATTAAAACAATAGCACCTTGATTGACTAATTGTAATGGAATCTAAACAAACTAGACCCTAGACAGCTTAAATATGTTTAACAGTTAATTTATCCCAGGGTAGTCAGAATACTAAATATCCCTTTTCTGAAAGTGTAATGGaaccatattaataataaaccatatattcttaatttatttgcaaCATTGCCTGAAAGTCTCCTTCTGTTTTTCGAGACACCTCCATACCTTTTAAATCACAGCTGGGTGGTACAGGATCATTTCACTGGTTCATTGTCTTCTCCCCCATTCCCCAAAGCATATTGAAACTTGTATGACAGagagtaagaaaaaaaaaatatatattttaatgaattgcttAAGGCAGACAAATTCCTTCCcccccatatatatattaaccttatggctttttggctcattgacaattaaaaaaacaatgatgaAGTGTCTGTCGATTCTTAGTCTGCTATTCACAGAACCCTGTTTTTCGCCGTATTACCACTACCTGCATCTCCGCGACTTGTAAATTAAGTGGTGATTCACTCTCCCACAACCTCCCATTCCCTGCGAGCTATGGGCACGCAAAAGGAGCATAGACCCAGTCTTTCACAGCTTCTACTTTATCAAACGCCCAACACAATGGTCTTCTCAAAGTTACAGAGTGAAGATGGGAGTGTGAATGGTTTTATGACTTGCACCAATAAGAGCAGGTACCAGAACAATTGACCCCTGTTTAAGGTTTCTCTGCTTCAGTTTTATTGTCTCTAatagtgtattttctttttcctttctatatattttttttacacagtgctaaaaaagaacaaacacaagaTGAAATTGTCCAGTTAAAGAAGAGAAAATCCCAATCCATTGAGGATCAGCTTGGTGATTTGGTTATTTTGGAGCATGAGTTTGCAGTTACAGTAAATGGATGTTGTTGAAAATAATCTTTGAGTGTTCAATACGCACTGCatgttcacaaaacaaaaaagtgtgtttGAGAGTTAATTCTATGAACTGACTGAAAAGATGGTCCCTGGCACAAAGTAACCAAACCACAAGATGTTCTGGGCCTACTGTAAGGTTATTGTTTTTTGGTAGTAAGGAGTTAAGGAAGTaactaaaaaacaatgtaatttaatacaCTTTTCATGCAGTGTCAGTATATTCAGAatgatgaattatttatttgacacctttttggggggtttgttttttttcacaacagaaatatattcaaaacttCCCCGAGTGTGCATGTATTGACATTTAAAAGGATTGTGATAtgtttgtacttttctttttttctctcattgaATGTTGTGTGATGGAACTTAGAATGAGTCACACGCGGTAAAGGGGGACTTCGaatgttatattttactgtGTGTTTCTCAACTCCAGTCCCTTGTGTCTATGAACCATCTGTGTTTTTGGCTTACCCATACAATGTAAAACATGGATATATAAAGAAGAGTTGTCTTGTACATGATTTTGAATAATtggcactgaaaataaaatgaagatagATCTAGAGAGTCtagatttcaataaaaaaaaaaagtcaggacCTGGATTTGAGATCGTGGCTTACCCAGActcttatttttcaaattgttgtaaaataatttgatcttggaaatgcatatttttgtctttaagtACATATTGAATttagatttgatttattaaaccccaaatgtattaattaattatgtctcattttaatatacatgtaatgcaGGTatgactg

Function

GO: NA

KEGG:

id description
ko04217 Necroptosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53337 lncRNA upstream 318835 24007353 ~ 24007850 (+) True G42780
TU53336 lncRNA upstream 322798 23997794 ~ 24003887 (+) True G42779
TU53241 lncRNA upstream 495285 23784408 ~ 23831400 (+) True G42705
TU53136 lncRNA upstream 766025 23554672 ~ 23560660 (+) True G42619
TU53059 lncRNA upstream 1463703 22861815 ~ 22862982 (+) True G42554
TU53377 lncRNA downstream 79008 24410842 ~ 24411044 (+) True G42816
TU53406 lncRNA downstream 413689 24745523 ~ 24745754 (+) True G42845
TU53408 lncRNA downstream 417858 24749692 ~ 24750256 (+) True G42847
TU53409 lncRNA downstream 418474 24750308 ~ 24750565 (+) True G42848
TU53410 lncRNA downstream 418973 24750807 ~ 24751467 (+) True G42849
AMCG00013196 mRNA upstream 105966 24216510 ~ 24220719 (+) True AMCG00013196
AMCG00013197 mRNA upstream 134203 24124906 ~ 24192482 (+) True AMCG00013197
AMCG00013195 mRNA upstream 210427 24022831 ~ 24116258 (+) True AMCG00013195
AMCG00013187 mRNA upstream 342260 23973082 ~ 23984425 (+) True AMCG00013187
AMCG00013188 mRNA upstream 364728 23952046 ~ 23961957 (+) True AMCG00013188
AMCG00013200 mRNA downstream 442964 24774798 ~ 24777606 (+) True AMCG00013200
AMCG00013203 mRNA downstream 456791 24788625 ~ 24793416 (+) True AMCG00013203
AMCG00013202 mRNA downstream 466493 24798327 ~ 24799733 (+) True AMCG00013202
AMCG00013209 mRNA downstream 623137 24954971 ~ 24957583 (+) True AMCG00013209
AMCG00013215 mRNA downstream 641883 24973717 ~ 24991262 (+) True AMCG00013215
TU52922 other upstream 2080895 22242429 ~ 22245790 (+) True G42453
TU52772 other upstream 2839877 21426660 ~ 21486808 (+) True G42344
TU52771 other upstream 2839877 21484907 ~ 21486808 (+) False G42344
TU52773 other upstream 2839877 21485321 ~ 21486808 (+) False G42344
TU52756 other upstream 2907898 21370843 ~ 21418787 (+) True AMCG00013126
TU53407 other downstream 415658 24747492 ~ 24749395 (+) True G42846
TU53419 other downstream 436590 24768424 ~ 24770148 (+) True G42858
TU53706 other downstream 1188333 25520167 ~ 25521681 (+) False AMCG00013236
TU53847 other downstream 1923145 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 2192992 26524826 ~ 26540049 (+) True G43263

Expression Profile