RNA id: AMCG00013199


Basic Information

Item Value
RNA id AMCG00013199
length 3536
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00013199
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24404338 ~ 24408807 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAACTGCACAACCTGGAAATAAGCCCGACAGGAAcatttctctcctctttctgAACGTTTCTATTCCTTTTGCAAGAAACAGTGCCCATGCAGTCCCGCCGTGTTTGAGTGCATTCCCGACGTGTATgctttgaagaagaagaagaagaagaagaagaagactcGCATCAGGGACTTCTGCAAACTTttgacagctttttttttttggcctggAGAAAGTGAAGTTTGCAGCATTTTTGGTTCCTGCGTTGAAAGACTTCTGTTTTAAAACCCGCAGGCTTGTGTCTCCAGCCTCCGCAGCTGCCTGTGTCGCGTCTCCCCTGCAGTCTCCAGATTCCCCACGTCCCGCGCATCCTCCGTCTTTCGCATGAATCTACTCGACCCCTTCCTGAAAATGACAGACGAGCCAGAGAAGTGTCTCTCCGACGCCCCCAGCCCGAGCATGTCCGAGGACTCCGCCGGGTCTCCGTGCCCGTCCGGCTCCGGCTCCGACACCGAGAACACCAGACCCTCCGAGAACCACCTGCTGGGGCCGGACGGGCAGCTGGGCGACTTCAAGAAGGACACCGAGGACGACAAGTTCCCCGTTTGCATCCGGGAGGCCGTGTCCCAGGTGCTGAAGGGCTACGACTGGACCCTGGTGCCCATGCCCGTCCGGGTGAACGGATCCAGCAAGAACAAGCCCCACGTTAAGAGACCCATGAACGCCTTCATGGTGTGGGCGCAGGCTGCCAGGAGGAAGCTGGCGGACCAGTACCCACACCTGCACAACGCCGAGCTCAGCAAGACCCTGGGCAAGCTGTGGAGATTACTGAACGAGGGTGAGAAGCGCCCTTTCGTGGAGGAGGCGGAGAGACTGCGGGTCCAGCATAAGAAAGATCACCCAGATTACAAGTACCAGCCCCGGCGCAGAAAGTCTGTGAAGAACGGGCAGAGCGAGCCCGAGGACGGCGCGGAGCAGACGCACATCTCGCCCAACGCGATCTTCAAGGCGCTGCAGCAGGCCGACTCGCCCGCCTCCAGCATGAGCGAGGTGCACTCCCCCGGGGAGCACTCGGGTCAGTCCCAAGGGCCCCCCACTCCTCCCACTACTCCCAAAACAGACATGCAGCCTGGCAAAGCTGACATGAAGCGGGAAGGACGCCCCCTTCAGGAGGGAAGCGGCAGGCAGCCGCACATTGACTTTAGAGATGTGGACATCGGGGAGCTGAGCAGCGACGTCATTTCCAACATCGAGACCTTCGACGTCAATGAGTTCGACCAGTACTTGCCACCTAACGGTCACCCCGGCGCGCCCGTCACCAACCCTGCCCACGGCCCCGGCGGCCAGGTGACTTACACAGGCAGCTATGGCATCAGCAGCCCTGCAGTCACCCAGGCAGCGGGCGCGGGCGGGCACAGTTGGATGcccaaacagcagcagcagcagcagcagcagcagcagcagcagcagcaacagcagcagcagcaacactcCCTAACCAGCCTGAGCAGCGAGCAGGGGCCAGGCCAGCAGAGAACGACACACATCAAGACCGAGCAGCTCAGCCCCAGCCACTACAGCGAGCAGCAGAGCTCTCCCCAGCACATCAGCTACGGCTCCTTCAACCTCCAGCACTACAGTTCCTCCTACCCCAGCATCACGAGGGCCCAGTATGACTATGCAGACCATCAGGGGGCCAACTCCTACTACAGCCACGCAGCCAGCCAGGGCTCCAGTCTGTACTCCTCTTTCGCCTACATGAGTCCAAGCCAGCGACCCATGTACACCCCCATCGCTGACACAACAGGGGTACCCTCCATCCCTCAGACGCACAGTCCTCAGCACTGGGAACAGCAGCCTGTCTACACACAGCTAACACGGCCTTAAGAGACATTCCCACAAAAAGcattgactttttaatttttttaaggcaCCTTTCTCAGAAACTGCTCCGTGCAGCCATCGTGCCACCATTCCCTGTCTTAAGAGTGAACACATACATCTGTTctgaaaataattcataatagtACAAAAGAGCTGGACTTGGAAAAAAATGAGACGTCAGATTTGGAATGGTTCACTCCGTGCCTTTTTACACTTGGAGTTGTGGTTATCATTTTTTTTAgccataattaaacaaaaaagaacttTGAAAATAATCCTCTGTGAGGAcatattcattataaatatttttagtatgtactgtgtatgtttcattacttttttgcagtttgttattttgggggatttatacatatttgtagaaaaaagaaaagctcttattttttcaaaatcagCTATAAACCACTCTCGGTAGTGCAGTCCTTTATGGCCTTATTTTGCTCTGACAAACatttttgtacagaaaataagtatatcttttccttttcattaacTATGCCTCGCAATaattttttgtgcttttgtatctttatttttgtttgtagcTCCTTTTTAAAGACCAGACTACAGAAATGAATAGAAGGGCTGATGTGAACGATGCCCTTTGATAAGGTGATAGTCATAAATTAATTGGATTACcttattattttgtagctttCTGAAATCCACCAGTGAGATGGAAGGCTATCACAATTGATAGGTAGATGTTGCATCCATGGGCCTTACTACATGACTTAGAAATGGATGTCGTcagttgtgctttttgttttgcttttgttatttttaagataCTGCCTTTGTGCCATCAGTGCCTATGGAGCTAGACTACATTTCTGAGTTGACCTACAAATGAAACGCCACACCAGCACACAACATAGAAGCCACAGCTGAGATACTGCTTTCTGTTTGACAGCATGTGCCTAACAGGCACAGGAAATGACCTTTAACACAAGAATCTTCCGCAGGTCATAACCAACTTAGTTTAGATTTTCAGTCCCAGCCCCCCTCAAATCCCACCCCCACTTCCTTGCCATTCttaaccattttaatttatttattagcattaattttattttaaagtaattatttgcattttattctttaatacAGCTGTatacaactaattaaaatttaaagaTCTAccctctgtatatataatagatatatatatatatatacaaacaggttTTCAGCAGAAGGGTATGCTTGTTTAAATATGGTACAAATAGTAACCctcttgtttatttatcatgtgtaaatgtttctgttgaaaagatttttttgttaaatcttGTATCTAGTTGTGTACAGATGAGTTTTAATTGTGATAaaacttgatttaattttttttaaagaaacaaaaaactggaagtttttttttcattcttacaaacatgaaaagaaaagtttATTTGAAGCTGTGGCTGCATTGTAaagatttgtttctttataaaattaccagcatatgttttttctttcaaaaagaGGTGTATTTCCTATTCTGTATTTCATATGTAAGTACTGACTTTTACAACTTTTAATGCAACTGAACaaaactttgttttctttagacGAGTTTAACAAGTTATTGTCTTTAAAGAAGCTTAtcttttgtattatattgtttgcaataaaagagaaaatgtattaa

Function

GO: NA

KEGG:

id description
K18435 SOX9; transcription factor SOX9 (SOX group E)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53359 lncRNA downstream 181600 24220651 ~ 24222738 (-) True G42800
TU53312 lncRNA downstream 487314 23912791 ~ 23917024 (-) True G42760
TU53287 lncRNA downstream 502418 23901443 ~ 23901920 (-) True G42743
TU53294 lncRNA downstream 556861 23845405 ~ 23847477 (-) False G42749
TU53286 lncRNA downstream 565192 23828046 ~ 23839146 (-) False AMCG00013184
TU53483 lncRNA upstream 470834 24879641 ~ 24882055 (-) False AMCG00013204
TU53601 lncRNA upstream 636571 25045378 ~ 25051849 (-) True G42993
TU53604 lncRNA upstream 670731 25079538 ~ 25082029 (-) False G42993
TU53605 lncRNA upstream 670731 25079538 ~ 25082029 (-) False G42993
TU53608 lncRNA upstream 670731 25079538 ~ 25082029 (-) False G42993
AMCG00013194 mRNA downstream 380918 24022377 ~ 24023420 (-) True AMCG00013194
AMCG00013193 mRNA downstream 400497 24002726 ~ 24003841 (-) True AMCG00013193
AMCG00013192 mRNA downstream 409082 23985127 ~ 23995256 (-) True AMCG00013192
AMCG00013189 mRNA downstream 455650 23941711 ~ 23948688 (-) True AMCG00013189
AMCG00013191 mRNA downstream 476760 23917200 ~ 23927578 (-) True AMCG00013191
AMCG00013201 mRNA upstream 312752 24721559 ~ 24778233 (-) True AMCG00013201
AMCG00013205 mRNA upstream 392205 24801012 ~ 24830971 (-) True AMCG00013205
AMCG00013206 mRNA upstream 436823 24845630 ~ 24862556 (-) True AMCG00013206
AMCG00013208 mRNA upstream 454368 24863175 ~ 24869166 (-) True AMCG00013208
AMCG00013207 mRNA upstream 460490 24869297 ~ 24876994 (-) True AMCG00013207
TU53293 other downstream 556861 23844083 ~ 23847477 (-) True G42749
TU52837 other downstream 2889645 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 2989374 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 3028575 21337067 ~ 21375763 (-) True G42381
TU53481 other upstream 473312 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 617069 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 666586 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 755176 25163983 ~ 25166758 (-) False AMCG00013223
TU53711 other upstream 1107273 25516080 ~ 25516963 (-) True G43070

Expression Profile