RNA id: TU53483



Basic Information


Item Value
RNA id TU53483
length 2415
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id AMCG00013204
representative False

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24879641 ~ 24902428 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ttttttcttaagaaATCAACAAGAAATCTTTATTTGACTGGTTATCTGTGAAACTGTTCTAATGGATTTGATCCTCATTCTCGGCATTGCTTTGATTCAATGTTAATGTTCTCTTTTTGCTGTGGCGGTCCTGTAGTGTTACCCTCTGTGAACAATGTGTAAAGGTTTTTAAGTGCTTGTTTTAGCAAGCgccttgtgtcattcatttCTCTTCTGGAGACGTGTGGCGTACTTGTGTACGTCGTGGTGACTGTTGTGCAAAAGTGaacctttttaaatatgcaactCAGTGGACTGCAGTGAGAGGCTAGAGCTCTGAGCTATGAGTAGTATTGTTGTAAAGTGACAAAAGTCAATAGTTTTATACAGAGTGCATATCTATCTATGATTCTTGTTGAATCCCTTATCCCTCAGTTTCACCAAGCATATAATAACCCTTTCCTTCCTTTCGCTGCAcatctatacatttattatgataTAGGCTGACAAATcaacactgtttttgttgttgcagcaATTTTTACAtagttgtggtttgtttttttccccatttggTTCAGTTTGCCTGACTTGTAAAGCCTAGACTTGATCAGCAAAGGAAAAACCTGATTCTACAATGAATCCAAGCACAAATTAGCCCTCCCCCTTCCATCCAAGACCGCAATTTCTAATCTGAAGTGCCTAAATCCCTTAAGGCATGGGAAATGGAGAaaacagtggggggaaaaaagtataagCTGTTCCAACATTCTGTGACcgatttaaatatttgtggCTGCTGTTGGTACCCTCAGGCCTGACTTCCTAAAAGATAACTGAATCTCCATCGTGTGTTCCCCGGATCACAGATAAAACCTGGTCAGCACATCTCGTACATTGAGTCTTGTGCGCTTTTCAATTGGACTGACACACTTCTTAAGTAAATCACGCTGCTGTAAAATAGcagttctttgttttaattgttctttGTATGTGCACGTGTGAAATAACTCTTCCGTGCACATTATAGCAGTCTATCATTGGTCATTTTTGCGGTCACCTTATTGTCAGAACTGGTCCTTACAAGGGGAGATAAACCAAATGGGTGTAGAAACCAAAATGAGTGGCACAACATGGATATTTCCCACATCCCAATTATATCTGAAAACTCTTTTCACAAGAGAAATGAATTTCTTCAGTTTCTAGTTCGGCTTTTGATATTGATTCAATACTGTGTATTTGCATatcagaaatgaaagaaaataaaaaaataaaacaccccaAAATACGTGTCTGGGTGGCAGCCACATTGGGATAGTCTGTCAGAGTTTACACACTGAAGGGTTTGCacagttttatgttttctggTGTGAACCAGGTGGACTCCTTTTAGGATCCAGTGGCTTAtctattatttttcaaacagtGGGTTATTACTTGTTATCtagactgaaaaacaaattatctgAATCAAAAATGTGTAGCCTATAGACATACCTGGAGGAAGGAAAGTGGTTATAAGATAAGTGGGGGACTAAAATGATCAGACACCCTTTTTTATCAGGGGAGCAAATGGGGAAAAGGCTTActcactgcattttgaaaacttCACGCAGTGTTTGTTGTtagtttaaattataaacttCCTATCTTGCTGCTAGACCAATTGCTAGGACATAGGTATGCTGTGAAGTTCTTCATGCTTTGGGTAAATCCACTAACATCACCCCcaacttgtttaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaaagaaaagaaaatctaagccctttttattgataatatttgatatttatctTAACAGCACTGTTGTGTGTACCTCTGCAGTCTTCTTTTACTTTATTACACCTTTTTGGTTACAAGTGAgatgtaatatatgtattttaaagaagaaatagTTTATCAGCACTTAGGTGACAAAAATCTAAGCTTTAGAcggctattttttatttttaaatcaaaacacgtCTGTGTCAACTGGTAAGTATATGATTTGGCAAGTTTTAATATCTTGCTCTTCAGAATAGGTTTATGTGTCTCAAAAGTGTAAAGTGAGAAATTAAAGCTATAAAAAAAGTAGTGAGTTTTATGaataaatggtaaataataaaatctgtttttgttatttttctgtctggGGTGTAATAAATTATGATATCACAGTACattgtatgaaaaaaatacataaaaataaaagtccatttaattgtaagtatttattaactaaattattgtactttttttgaAATCTGTAGATAAGTAATAtgatgtattcatatataaCAACCATGAAATTAACTGTTTCATTCTCAGTCAGAGGCgtcattaatttattgatgtatatactgtatgtttgttgATATACAgcttactttattttgtatatgaccaataaacacattttgaaaaagt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU53359 lncRNA downstream 656903 24220651 ~ 24222738 (-) True G42800
TU53312 lncRNA downstream 962617 23912791 ~ 23917024 (-) True G42760
TU53287 lncRNA downstream 977721 23901443 ~ 23901920 (-) True G42743
TU53294 lncRNA downstream 1032164 23845405 ~ 23847477 (-) False G42749
TU53286 lncRNA downstream 1040495 23828046 ~ 23839146 (-) False AMCG00013184
TU53601 lncRNA upstream 163323 25045378 ~ 25051849 (-) True G42993
TU53604 lncRNA upstream 197483 25079538 ~ 25082029 (-) False G42993
TU53605 lncRNA upstream 197483 25079538 ~ 25082029 (-) False G42993
TU53608 lncRNA upstream 197483 25079538 ~ 25082029 (-) False G42993
TU53610 lncRNA upstream 197483 25079538 ~ 25376323 (-) False G42993
AMCG00013207 mRNA downstream 2647 24869297 ~ 24876994 (-) True AMCG00013207
AMCG00013208 mRNA downstream 10475 24863175 ~ 24869166 (-) True AMCG00013208
AMCG00013206 mRNA downstream 17085 24845630 ~ 24862556 (-) True AMCG00013206
AMCG00013205 mRNA downstream 48670 24801012 ~ 24830971 (-) True AMCG00013205
AMCG00013201 mRNA downstream 101408 24721559 ~ 24778233 (-) True AMCG00013201
AMCG00013204 mRNA upstream 62 24882117 ~ 24888141 (-) False AMCG00013204
AMCG00013210 mRNA upstream 25066 24907121 ~ 24912555 (-) True AMCG00013210
AMCG00013212 mRNA upstream 38246 24920301 ~ 24921206 (-) True AMCG00013212
AMCG00013211 mRNA upstream 45082 24927137 ~ 24943446 (-) True AMCG00013211
AMCG00013216 mRNA upstream 143683 25025738 ~ 25028956 (-) True AMCG00013216
TU53293 other downstream 1032164 23844083 ~ 23847477 (-) True G42749
TU52837 other downstream 3364948 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 3464677 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 3503878 21337067 ~ 21375763 (-) True G42381
TU53481 other upstream 64 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 143821 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 193338 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 281928 25163983 ~ 25166758 (-) False AMCG00013223
TU53711 other upstream 634025 25516080 ~ 25516963 (-) True G43070

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00008436 True 4048 lncRNA 0.35 2 NC_007122.7 45331401 ~ 45335873 (+)
eurasian perch (Perca fluviatilis) TU7110 True 2237 lncRNA 0.35 1 NC_053112.1 17079161 ~ 17081397 (-)
mexican tetra (Astyanax mexicanus) TU7110 True 3801 lncRNA 0.47 2 NC_035897.1 21916582 ~ 21920497 (+)