RNA id: AMCG00013205


Basic Information

Item Value
RNA id AMCG00013205
length 2728
RNA type mRNA
GC content 0.38
exon number 8
gene id AMCG00013205
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24801012 ~ 24830971 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATTTGCCTGCAGTACTGGATAACCTATTGACCTCAATGAAGTTCGTTCTGCACGGAATGGGTGTCCTTAGGATCAATCTGGCcagcaacaaaaacaagGTCCACGCTCACTCTGTGCTGTCTTGTGGCCGCTGTTTCGATGAAGACCAGGTGCTGTTCCCCTTTATAGCTCATGCCTTGCGCTGTCTGTGGGCCGACCAGGGTAACATGGCCCGGATCATCGCCCCAGAGTACATGCCCACCGAGACTGATGTTCTGAGAGTCAGGCTGCGGACTACTGGTGTCATCGAGACCCAGTTCAAAGTCAGCCACCTGGTTTTCAGGATGTATGACGTGGGGGGgcagaggacagagaggaggaAGTGGATCAGCTGTTTTGAAGACGTCAGGGCTGTGTTGTTTGTGGTCTCTCTCAGCGGGTACGACATGACCCTGGTGGAAGACCCGTCCACGAATCGTCTACAAGAGAGCCTGAAACTCTTTTCATCAATCTGCAATAATGTATTCTTCAGAAGTACCTCCATGattTTGTTCCTCAACAAAATTGACCTTTTTCAAGAGAAGATTTTACATTCAAGCAGACATTTGAGACTGTATCTCCCACAGTACAGAGGTCCCGACTTTGACGTAGACTCTGCAGCTCGATACATCGCCGGCATGTTCCTCTCACTCAATAAGACTCCCAGCAAGCTCATCTATCACCATTTCACCACGGCCACAGACACCTCCAACGTGCAAATTGTCTTCCAGGTGGTTATGGACACAATCATCAAGGAAAACCTGGAAGCAGTGTCGTTGCTCTGAGAAGAAACCCGATGGTGCTCTTTGACCAGCAATCGAGAAGAGAGTGTTGCCATTGTATGATGGATTATGCTACTGTATTATTGCCTGAAGCCACTTTTAAATTCTATGTTTAATATATCTTCCAAAGGACTGGCCGGGACTTAAAGGCTACCTGTCTTTTTAAAACGACtcacaccatttaaaaaacataatgcaaaaaaatgcaatttgtgtacatttgtatatttattttgtaatctcCAGAAATAATTCCAAGTATTcatacaagaacaacaaaaatcagCTGcagtaaatgctttttttttttaattttttttttttttttaaagcttatttgttccattttgtgaaatgcatCTACTTGTTACTACAACCACAAGTCAGTTTCTAAAGTAATTAGTCAAACTGCTTGGATACTAACACCTAAAGGTAAAATCCAAACCTAGCCTCAACTGATGTTGCAGCCCTCTTCAGAGAGATATTTGAGAGAACCAAATCTCTTCACTGCTGGTAATATCTTTACACTTCAGATAAGTGAcactgctttgcttttttctgttttcataaaatacaatCCATCACGAAAAGTATTGGGACTACAGAGAACTACCAAAAGATAGGATGCGAGTCCACCCTTGACTTTAATTACTGCCACAGTccttttttgtaaattgttctATGGTACGGGCAGATTAGTCTTGATTGTTAAGTTCCACACTGTTTCTACAGCTTCATAATCATTTGTGGGAGGGTTATTATGCAAGAGATCAATGCATTTTGGAATTAAATACTAAACTagaataaaagtattatttggAGTTCAATTATATTGCTCCATGATGCTATATTAGCAAGTGACTAATAGCTGTAACTTTTTCTGTTGTATGGATTGAGCAGGATGTATTTCTTGGCTCACTATGCAAAGACAAAAGCTTTACCAACGCTTGTGGACATGCTATTTCTGCCTTCAGTCAATCGATCAAGTGTTGTCTGACACAGGTATAATTGGAACCAGATCATGGTGAGAAAAATACCCTTATTTCCTATTATAAATCCATGAATCCTGTCATTCTTCACAAGCAATTCAAACCTTGGTTTACTCTGTTGTAGGGATATACTGCttttactttaatgtttttatttgtttctttactttttgAGCTATGCTGATGTTAGAAGCAGTacttacaaaattaattttaacattatatttgaGGTTTGccaccttttttttgtattagatTATACTGTTATCCAGTAGGTATGTACTATATGTTAAACTGGATTGTTCTGGCTGATATCAAGTCATGATGGAAGTCTGTGAATTGAGTGCATGAACTCCCCCTTTCTTTTGTTTGGCAGCTGCGACTCCACACCTGCTCATTAACAACCAAAAATAACACttgtaattgattttctttatttgattaaCACATACAGGTCCATACCTTCACTGTAAATGTAGCTGTTTTTTTACGCTAACTTGTCTACAGTGTAGCAGTATGAATCTACTGAATAGGTGCCTTCAGTTCAGAAAAACAAGCATGAAAAATTATCAACGTTTGGTTTTCATTTGCAGGTGGAGAAGGATGAATTGACAAGCTGTGCTGGTCTATTTTCCTTCTCCATTGTTTCTAAAGTTTGAATTTAAAAGTTAACATTGAGTCAGTGAGAGATTCTAAAATGGTTCCCTAAACTGGAGTAAGAAAAGGAAACCTCTCCAAAAACTCCGTGCCTTAAGGTGTAAGAAGATCTACCTGTgccttttttgtattatcacAAGTATGctatttttgtccatgccattttaatatatgtatatacatatttttaattaatttaataaatgtttgtattacttTGATGCAAATTCAGTGTAtcaagttttatttgtgtaaattcATCCACTGTGAAtgggaga

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53359 lncRNA downstream 578274 24220651 ~ 24222738 (-) True G42800
TU53312 lncRNA downstream 883988 23912791 ~ 23917024 (-) True G42760
TU53287 lncRNA downstream 899092 23901443 ~ 23901920 (-) True G42743
TU53294 lncRNA downstream 953535 23845405 ~ 23847477 (-) False G42749
TU53286 lncRNA downstream 961866 23828046 ~ 23839146 (-) False AMCG00013184
TU53483 lncRNA upstream 48670 24879641 ~ 24882055 (-) False AMCG00013204
TU53601 lncRNA upstream 214407 25045378 ~ 25051849 (-) True G42993
TU53604 lncRNA upstream 248567 25079538 ~ 25082029 (-) False G42993
TU53605 lncRNA upstream 248567 25079538 ~ 25082029 (-) False G42993
TU53608 lncRNA upstream 248567 25079538 ~ 25082029 (-) False G42993
AMCG00013201 mRNA downstream 22779 24721559 ~ 24778233 (-) True AMCG00013201
AMCG00013199 mRNA downstream 392205 24404338 ~ 24408807 (-) True AMCG00013199
AMCG00013194 mRNA downstream 777592 24022377 ~ 24023420 (-) True AMCG00013194
AMCG00013193 mRNA downstream 797171 24002726 ~ 24003841 (-) True AMCG00013193
AMCG00013192 mRNA downstream 805756 23985127 ~ 23995256 (-) True AMCG00013192
AMCG00013206 mRNA upstream 14659 24845630 ~ 24862556 (-) True AMCG00013206
AMCG00013208 mRNA upstream 32204 24863175 ~ 24869166 (-) True AMCG00013208
AMCG00013207 mRNA upstream 38326 24869297 ~ 24876994 (-) True AMCG00013207
AMCG00013204 mRNA upstream 51146 24882117 ~ 24888141 (-) False AMCG00013204
AMCG00013210 mRNA upstream 76150 24907121 ~ 24912555 (-) True AMCG00013210
TU53293 other downstream 953535 23844083 ~ 23847477 (-) True G42749
TU52837 other downstream 3286319 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 3386048 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 3425249 21337067 ~ 21375763 (-) True G42381
TU53481 other upstream 51148 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 194905 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 244422 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 333012 25163983 ~ 25166758 (-) False AMCG00013223
TU53711 other upstream 685109 25516080 ~ 25516963 (-) True G43070

Expression Profile