RNA id: AMCG00013207


Basic Information

Item Value
RNA id AMCG00013207
length 2960
RNA type mRNA
GC content 0.47
exon number 9
gene id AMCG00013207
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24869297 ~ 24876994 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGATTTTGTGATTCCCGGAGTATTCTCGTTATGTTTATgctattttgtaatgttaagtTTCCGTTCCATAAAACCATCGTGTTGCACAATTAGTAACTAAACATGGTCTAACAACAGCGATGTATATTTGTACGTTATTGTAACAACTGATCAGTCGGCGTGCTAATTGACCCACATGGCTGTAAAACGGAATAGAAACGGAGATGGACTGAAAGAATTACGCTCACTACATTGTGCCATGCTTTGAGACTCGGTTTGTGTAGTTATTTGGTTAAGCCCAAGGAAGACGTACTTTATTGTGTTCAATCCAGATCCATTGCCGACGGGGCTCCGGTACGTGTGACGGAGCAGCCGAAGCGAAATTCAAAGCTGTCAGCCAGCAGCAGGAAGCGGGATGGAGAGCTATGAGGAGTTCTGTCGGACCCAGGTGCTTCATGTGAAGATCAGGGCTTTACAACAAACCCACAACAATGAAGCCCTTCAACCCCTCAGCCTCTGTGGCTCATCTTTCATGAAGGTTCCCATCCTTCCACCACtgCTGACCAAGGAGCGGAAAGCAGAGATGCTGAAATATAAAGACGAAGCCTTGAAGGTTGAAAACAAGAGGCGTAATCTTCCCAGGGAGCTACGGATGTCCCGTGTTCGCGCCCTGCTTGACAGTGTCCAGctcaGGAAGGCACCCACCTTGGAGGAATTCATCCAAACTGAAGTTCCTGATTTGTTCAGAGAAAGTACTGAAGGCCAATGCAAAGACATTCAGTTGGAGGATAACACAGATATCCAAATTGACTCTTCACTGCCCTGCACACCCACTGCCAAACCAGACCACCAGGAAAACGTGGATGCAACTGCTGAAGATACTTGCAGTGCTAAATCCTCTGAAGTCTGTCACAGTACTTGCACAATCCAGGGGATGGGTGAAAAAGCAGTGTGCCAAAATCTCCTGAGTGACTTGGTCCAGTCTCCAGAAACCTGCAGCACCTTGGCAAATGACATCCAGGTGTATAAATGTCCAGAGTCTCATCAGAATATGAGTCAAAGGTCTGTGTCGTCAGGGTATCTTACTTATGATAATGTAGATCTCAGTGGTAATGTAAACAGCGGAATGGAGCATTTTCTACTAAGTAAAGATGAGCATGCTGTGCCACAGGATGGATTTTTTCTTCACCCAAGGACCTGTGTGACTTCTAAGATCCCTGATTCAATTGGGGAATTTAAGATTAGTTCGCAAGACCTTCAGGAGGAAAGCACAGCTGGTGCCCAGAATATAGTTTTGAAACCTGCAGAGCTTGAAAATGCCAGAATTGAAAAACCAAGTGACCCTGGGCTTGAAGAGAAGCCTCACCACATTTCACTTCAGAGCATGCTTAAGATGTCCCAGGAGTATCGtaaaaaacagaagcagctcAGGAGCATGAAAGCAAGGGCCTCTGAGAATTGCAGGCCTGATAGTCTCTCTGACAAAGAAAACGAGGAGTTCTCCTGGCCACTGAGAGACGAGTCCAAGAAAGGGAACAGAATTAAGTTAATTCCCAGGCCACGTTTCTGTAAAAGCCCAGTTCATTCCGTGAACTTCAAATGCCATTCCAGAAAAAAGCAATTCGTAAATATGTCTGTGAGTATTAGTGATAATCCAGACAGCAATAAGAAAATCGATTCAGATGCACCAGAAGCTGATCAAGTGATGAAGAGCAGGAATCACACGCTTACTCAACTGGAGATGAACCTGTCCAGTCTAACGGCCTTCATTTCAGCCGTGGAATCAACCATCACAGAAATATCTGGCGCTTCGACTCCCGACACAAAGAACACACTCACTGTGAAAGATGACAAAGGCTCTTTTGCTCGATGGACTTTGGAGCCGAGCAAAATCCCTGTACGCTGTAAAACAGAATCAACTTTCATaaagagaaaaactgaaaccaCGCCTCAGTGCCACTCAGTAAACAGGTCGTGTGATGATGAATCTTCTACAGGACGAGAGTGTTGGGGGCTGCATTCTGGACCTGAGAGGGACCCTCTGAAAAAAGCATTGACACTCAAGAGCGAGAATAATGGGCAGGAGTCACGAGCCAGAAGAAGACTCCTCATGAATGCCCCACTTCTAAACACCCGCAGAGACTCAGGGGTGACCGATCAGCGCTCCACTACCCTAAATGCGCGCCTGTCTGTCCTTGGCATACAGCAGCAGGTGAGGCGGGAGCATGCCGGGGGGATTTGTGCTTTGCTCGAGGAGCAGCAGAAAGCACAACAGAACATGATGCAGGATGCCCGCCCTTCCCCCCGGCTGTCCATAATTGCAGCCACGGTCAGCGGATACCTGACCAGAAGACTGCTGCGCACAGAACGTGTTATGCAGCTCGTCAGGATTGTCAAGGACACTCAACAGTTCCTGCTGGCTTTTCAGCCTCAGACTCCTGGACGGGCCgagttcacttgcacacaggaCCGGGCTTTACATAAGCAAGTCCTGCTCCAGCTCCGCTCAGCTCGTTATGAAGTCCACGACATTTTCTTCAACTGTTCCCCGGCAGTAAAAATGCAGTTGATCTCCAGGGATCGGGAATTGGTGAGAGAGAGGAACTTACAACACGTGATCTCCAGGCATCGGGAATTGGCGAGAGAGAAGGACTTAAAATACAAGGATTCAGAAAGGAGCTGCGGAGAGCCCGAGAGTGCTTGGGAATATTCAGCCTGGGACACGATCGCGTAAACATCCCTGCAAAGAGCAAAGGGCCCCCACTAAACTCTGATAACACACATGACCCCTGAGAGAGAATCTGAGACGCCTACACTGACCGCCAAAGACCAGCAAGACAATCATTCGGTGGATCTCGGATGCTTCTTGTCCACACACAGTGTCTTaaattggtgtatttatttaatgtattattagtattaaataTTTCTAATTTACCACTGTTTAATTTGTCTCATTCTTAGGATTCCCTTGAGAGCC

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53359 lncRNA downstream 646559 24220651 ~ 24222738 (-) True G42800
TU53312 lncRNA downstream 952273 23912791 ~ 23917024 (-) True G42760
TU53287 lncRNA downstream 967377 23901443 ~ 23901920 (-) True G42743
TU53294 lncRNA downstream 1021820 23845405 ~ 23847477 (-) False G42749
TU53286 lncRNA downstream 1030151 23828046 ~ 23839146 (-) False AMCG00013184
TU53483 lncRNA upstream 2647 24879641 ~ 24882055 (-) False AMCG00013204
TU53601 lncRNA upstream 168384 25045378 ~ 25051849 (-) True G42993
TU53604 lncRNA upstream 202544 25079538 ~ 25082029 (-) False G42993
TU53605 lncRNA upstream 202544 25079538 ~ 25082029 (-) False G42993
TU53608 lncRNA upstream 202544 25079538 ~ 25082029 (-) False G42993
AMCG00013208 mRNA downstream 131 24863175 ~ 24869166 (-) True AMCG00013208
AMCG00013206 mRNA downstream 6741 24845630 ~ 24862556 (-) True AMCG00013206
AMCG00013205 mRNA downstream 38326 24801012 ~ 24830971 (-) True AMCG00013205
AMCG00013201 mRNA downstream 91064 24721559 ~ 24778233 (-) True AMCG00013201
AMCG00013199 mRNA downstream 460490 24404338 ~ 24408807 (-) True AMCG00013199
AMCG00013204 mRNA upstream 5123 24882117 ~ 24888141 (-) False AMCG00013204
AMCG00013210 mRNA upstream 30127 24907121 ~ 24912555 (-) True AMCG00013210
AMCG00013212 mRNA upstream 43307 24920301 ~ 24921206 (-) True AMCG00013212
AMCG00013211 mRNA upstream 50143 24927137 ~ 24943446 (-) True AMCG00013211
AMCG00013216 mRNA upstream 148744 25025738 ~ 25028956 (-) True AMCG00013216
TU53293 other downstream 1021820 23844083 ~ 23847477 (-) True G42749
TU52837 other downstream 3354604 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 3454333 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 3493534 21337067 ~ 21375763 (-) True G42381
TU53481 other upstream 5125 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 148882 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 198399 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 286989 25163983 ~ 25166758 (-) False AMCG00013223
TU53711 other upstream 639086 25516080 ~ 25516963 (-) True G43070

Expression Profile