RNA id: AMCG00013208


Basic Information

Item Value
RNA id AMCG00013208
length 2422
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00013208
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24863175 ~ 24869166 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACTAGAGGGCGCTGTTGTGGGAAGGCTATGTTCATGCACCCGGTCATGTCTTGTCTGCGCTTGTTGGTTTAAATGCCCGTCCTGGTTGTTTGGATACATCAGCACAACAGGAAGAATGGAGCCGGCGCAGCGGCCCGGTGTGTCCGCTCGGACGGAGAGGAAAGCGCAAGAGAGGGCGAAGATACTGCAGCAGGAGAACAAGAGGAACACGCTGAAGCTCGTGTCCAGGATCTTGAAAAAATCTGAGTGTGAGCGGACGGAAGAGGAGCTGTCTGTGCTACAGAGGTATGAAGAGACCGTACAGGAGCTCACACTGCGTCAAATCAGGAGGGACAACCTGAAGAGAAAGCAAGAAGAGGTTGTCGACAGTCCAGATGAGCTGCTGAAGAAAGTGAAAGAGCTGTCGGCCGCTGTTCGAGAAGCCAACTACCTGGTGGTGTACACTGGAGCTGGGATTAGCACGGCAGCTTCCATCCCAGACTACAGAGGCCCGAATGGAGTGTGGACACTGCTGCAGAAAGGCAGACCAGTAAGtgcTTCAGACCTCAGTGAAGCTGAACCCACGCTCACTCACATGTGCATTAGGAAACTGTATGAAGAGAAACTGgtGCAGCATGTGGTGTCTCAGAACTGTGACGGGCTCCATCTGCGCAGCGGTCTGCCTCGAGAGGCGCTCTCTGAGCTACACGGGAACATGTTCATTGAGGTGTGCACCGCCTGTTCCCCCCCCAGGGAGTTTATCCGGCTGTTTGACGTGACGGAGCGCACCTCTCTGCACAGACACGGCACAGGACGCAGCTGCCCCCACTGCGGCGCCGAGCTCAGGGACACCATCGTCCACTTTGGGGAGCGCGGTACACTGGAACAACCACTCAACTGGAAAGGGGCGGCTGAGGCGGCTGGGAAGGCAGACCTCATCCTCTGCCTGGGCTCCAGCTTGAAGGTCCTTAAGAAATATGCCTGTCTGTGGTGTATGAACAGAGCTCCCAACAAAAGACCTAAGCTCATTATTGTAAATTTACAgtggacACCAAAAGATGACCTTGCTGCCCTCAAAATCCATGGGAAATGTGATGATGTCATTGGTCTTTTGATGAAGGAACTGGACCTCCAAACTCAAGAATATGACAAATTGGAGGACCCTATTTTCAGCCTCGCCACTGCCCTGAGGCCAGAGGAGGAGGATAGTCACAGTCGTAAACTGATAGTGCCTCCTGCTGGCCAGGAGGATTGCTCACAGGGGTCCACAGTGGAGCCTGGGGGGATGTCTGTCCAGGGAGGCTGGTATGGCCGTGGCTGTGCCAAGggcaggaagaagaagaagccaTCAACTTGAAAAGTACAGGATGAAACCGCAGAAACGTATTCACAAGTTTTGCAGATGGTAATTGTTGAAATCTGTAATGGGAGAACTTCAATTTTTCCCCTTTCACAAAGTCTACAACTGACAGAGTCTCCAAACCACCCAGTGGCACAGATAGAAGATTTTGGATTCTATTTGTGCAATTTTGAATATGCACCTTACTTTGTCCTCAGGAATTTTTGTCGCAGTTAAATACTTTTAAGTTGAGAGGCACAACTGTTGTACTGACAACAGGGCATTGGACACAAGCCTTGGAATAATCCTTTTATTTGAATCTTGATCTGTTTCTAAAATGAGAAACGTATCTTTCGTATTACGAAGTTCTCATTGTGTTAGTACCTGTGCATGTTTACATAtaaacttaaatttaaaaatgggtACTAATGAGAAACAAATTAAGTTCTTTAATTTAAGGGGGTTGAGTTGCAACATGCTCTGTTGCTTAACACATGGGTTCAGCCACAAGTTGTTGTTTGATGTCGAAATTGAGAAAGTTAAAAGAGCCCTTAGattaacaactttttttttcaattaatatttaaattaccaCTGCCactgtttacaaaacaatacCTTCTGAAGCATTGAAGGCAACTCAGGGGCAAAGTTCTTACAAATGGGCATTTTTGTGCACTTGTGATGCTATAGCCATGATACATACAAACCTTCCTTCTTACTGATGACAGTTCAACTTTGCAGCTGTGTTTTACTTATGTGTATTCAGTTTGGGGtttttgtatacttttttttctctcccccatgtattaatatattggTATTTTGACACTTGTCTCAGGACTTGTGACTGCAATAGTATTTTTGAGAGTGCCACAATGTCTTATAACCTTTCTTTACTGGTTCCTTTATCTGGACTATTCAAAGCTGTTTACAATACAACTTACAGTGCTTCAGCAGTTCAGAAATGCTTTTTAGTGTTCAGCAAAActtcattatattatttcttgAACTACTGCTTGGACTGGAtgtaataaaattacattttacaatttttttctgtcactgtctttgtttgcatttcttaaaaagTCATAAAAAG

Function

GO: NA

KEGG:

id description
K11417 SIRT7, SIR2L7; NAD+-dependent protein deacetylase sirtuin 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53359 lncRNA downstream 640437 24220651 ~ 24222738 (-) True G42800
TU53312 lncRNA downstream 946151 23912791 ~ 23917024 (-) True G42760
TU53287 lncRNA downstream 961255 23901443 ~ 23901920 (-) True G42743
TU53294 lncRNA downstream 1015698 23845405 ~ 23847477 (-) False G42749
TU53286 lncRNA downstream 1024029 23828046 ~ 23839146 (-) False AMCG00013184
TU53483 lncRNA upstream 10475 24879641 ~ 24882055 (-) False AMCG00013204
TU53601 lncRNA upstream 176212 25045378 ~ 25051849 (-) True G42993
TU53604 lncRNA upstream 210372 25079538 ~ 25082029 (-) False G42993
TU53605 lncRNA upstream 210372 25079538 ~ 25082029 (-) False G42993
TU53608 lncRNA upstream 210372 25079538 ~ 25082029 (-) False G42993
AMCG00013206 mRNA downstream 619 24845630 ~ 24862556 (-) True AMCG00013206
AMCG00013205 mRNA downstream 32204 24801012 ~ 24830971 (-) True AMCG00013205
AMCG00013201 mRNA downstream 84942 24721559 ~ 24778233 (-) True AMCG00013201
AMCG00013199 mRNA downstream 454368 24404338 ~ 24408807 (-) True AMCG00013199
AMCG00013194 mRNA downstream 839755 24022377 ~ 24023420 (-) True AMCG00013194
AMCG00013207 mRNA upstream 131 24869297 ~ 24876994 (-) True AMCG00013207
AMCG00013204 mRNA upstream 12951 24882117 ~ 24888141 (-) False AMCG00013204
AMCG00013210 mRNA upstream 37955 24907121 ~ 24912555 (-) True AMCG00013210
AMCG00013212 mRNA upstream 51135 24920301 ~ 24921206 (-) True AMCG00013212
AMCG00013211 mRNA upstream 57971 24927137 ~ 24943446 (-) True AMCG00013211
TU53293 other downstream 1015698 23844083 ~ 23847477 (-) True G42749
TU52837 other downstream 3348482 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 3448211 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 3487412 21337067 ~ 21375763 (-) True G42381
TU53481 other upstream 12953 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 156710 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 206227 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 294817 25163983 ~ 25166758 (-) False AMCG00013223
TU53711 other upstream 646914 25516080 ~ 25516963 (-) True G43070

Expression Profile