RNA id: AMCG00013210


Basic Information

Item Value
RNA id AMCG00013210
length 2309
RNA type mRNA
GC content 0.47
exon number 8
gene id AMCG00013210
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24907121 ~ 24912555 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCATTGGTCACGATACATGTCACTCAAAGATTATTTCCCGGAACACGTGTGGGGCAGCATTTTGGAGGAAGCCACGTTGACACCGGTTTCTATTTTGTACTACAAGAAAAAAGAAGGGGACGTCCAGTGAGAGGTGGGCTGCAGGAGTTTCTATGCGAAGGACTGACACGGACTGGCAGAGATGAGTGTGGGTTTCATTGGAGCCGGCCAGCTGGCTCATGCGTTGGTCAAAGGCTTTTCCGCTGCGGGCATAATCGCTGCCCACAAGATCACCGCAAGCTCTCCAGACACAGACCTGCCTACCGTGTCAGGACTGCGGAAACTGGGGATCAATTTTACGACCAGCAACAAAGAGACGGTGAAGAATAGCGATGTGCTGTTCCTGGCTGTCAAACCGCACATCATCCCCTTCGTGCTGGACGAGATCGGCCCTGACATCATGGAGCGACACCTGATCGTGTCCTGCGCTGCCGGTGTCACCATCAGCTCCATCGAGAAGAAACTGCTGCAGCACCACCCGGAACCCAAGGTGATGCGGCTCATGACCAACACCCCAGTGGTGGTGCGGGAAGGGGCCACTGTGTACGCCACCGGGACCCACGCAGAAATAGAGGACAGCCAGCTGTTGGAGCAGCTAATGGCCAGCGTGGGCTTCTGCACTGAAGTGGAGGAGGACCTGATTGATGCCGTCACCGGCCTCAGTGGCAGTGGCCCGGCCTATGCCTTTACAGCACTCGACGCCTTGGCAGATGGGGGGGTGAAGATGGGGCTCCCGAGGCGGCTGGCAGTCAGACTGGGGGCTCAAGCCTTACTGGGGGCTGCAAAAATGCTGCTTGATTCAGAACAGCACCCTGGCCAGCTGAAAGACAATGTGTGCTCACCAGGGGGCGCCACCATCCATGCCCTGCACTTCCTCGAGAGCGGGGGGTTCCGGAGCTTGCTCATCAACGCCGTGGAGGCTTCCTGCATCAGGACCAAGGAGCTGCAGATGCTGGCTGACCAGGAGCAGATCTCCCCAGCTGCCATCAAAAAGACCACGCTGGACAAGGTGCGACAGCAGTCCTCGACCGTGGGAGCCAAGACCGGCCTCAACCTGTTCAACAACACGCGCCCCGGTATCAAGAAGAACTGAGCACACAGCCACCACAGAATCCCTATAAGAGGCATTACTTACTGATGTCACTTAACTTGCCTTTATCTGGTCCACagaagtgtgtttttaaaaagagaaaccaGCAGACAACCAGTGTTGCGTTCTTATTCCACACAGTCTGAGTGTCAAATGGAGGGAGGAAGCATTCGAGAGTTGAGCTGCAACCCAGAGGAGCGAGAGGTCACTTGTCCAACTCAGTGTTAGgattatgtttttgtcttttagaTTAAGCTTAATTGtgcctgtgttttaaaatatattttattttcttgtcatttttgttCTCTGTTGAAACATTAACCATGGCTACAAAAAACACCCAGCCAACAGCCAACAGATCTTCGGTTGTGGGACTATTTGCGATCCTCTAcgaaatgtaatttgaataaataagcTGCAAGTCAGTTCTGAAACATTTTCTGAAGCTGAGTGGGGCTAGTATAACATTCTGTCTTGAGAAACTGCTCCTGCGAAGGATATGGAGTTAAAAAACCAAACCCTAATGACAGCCAGGCTTGGAAGAAAGCGTACCTGATATGATTCCACAGTGGTGCAATATTCAGGAAGCCACAGCAAGTCTAAATGCTTCTAGAATGCcagtaaatattttttctgttttatatatttaaattgatagaTCTGTGTTGGAAGAAGATACATCTCACTGTAGAAAGACAGTGCACCAAAGCCCTGATATTTCATCatcttttgttacattttatttggcatctttgagtttaatgtttttatatgtgtgtcTAACTGATATACTGCAGTTCTGTctgacgaaaaaaaaaaaaaaaaaacttgggaGCAACCATTGTAGTGACAATAACCAATCACAGATTATGTCAATCAGGAACCAAAACTGTCAAAGAACACGGTTTGGAAATTTGgttcttttgtatttatttttttgtaacaaaatTTCTACTGGGATATTTTAGTTGCATACAACTATCAATCCGTGTGTATCCTTCACATGAAAGGATACGAATAAATTTCAGTTCGGCtgtctgtgaaatgtgttttactgtatatattcaaaaCACGCACAAGCACACACGCCACAACAGTACTTTCTGAGGTTCAGTTGGGAactattttctttacaaaaatatgtgaattgACATTATGTATAATTCTCACAGAAG

Function

GO: NA

KEGG:

id description
K00286 proC; pyrroline-5-carboxylate reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53483 lncRNA downstream 25066 24879641 ~ 24882055 (-) False AMCG00013204
TU53359 lncRNA downstream 684383 24220651 ~ 24222738 (-) True G42800
TU53312 lncRNA downstream 990097 23912791 ~ 23917024 (-) True G42760
TU53287 lncRNA downstream 1005201 23901443 ~ 23901920 (-) True G42743
TU53294 lncRNA downstream 1059644 23845405 ~ 23847477 (-) False G42749
TU53601 lncRNA upstream 132823 25045378 ~ 25051849 (-) True G42993
TU53604 lncRNA upstream 166983 25079538 ~ 25082029 (-) False G42993
TU53605 lncRNA upstream 166983 25079538 ~ 25082029 (-) False G42993
TU53608 lncRNA upstream 166983 25079538 ~ 25082029 (-) False G42993
TU53610 lncRNA upstream 166983 25079538 ~ 25376323 (-) False G42993
AMCG00013204 mRNA downstream 18980 24882117 ~ 24888141 (-) False AMCG00013204
AMCG00013207 mRNA downstream 30127 24869297 ~ 24876994 (-) True AMCG00013207
AMCG00013208 mRNA downstream 37955 24863175 ~ 24869166 (-) True AMCG00013208
AMCG00013206 mRNA downstream 44565 24845630 ~ 24862556 (-) True AMCG00013206
AMCG00013205 mRNA downstream 76150 24801012 ~ 24830971 (-) True AMCG00013205
AMCG00013212 mRNA upstream 7746 24920301 ~ 24921206 (-) True AMCG00013212
AMCG00013211 mRNA upstream 14582 24927137 ~ 24943446 (-) True AMCG00013211
AMCG00013216 mRNA upstream 113183 25025738 ~ 25028956 (-) True AMCG00013216
AMCG00013217 mRNA upstream 118036 25030591 ~ 25031773 (-) True AMCG00013217
AMCG00013224 mRNA upstream 186796 25099351 ~ 25111435 (-) True AMCG00013224
TU53481 other downstream 4693 24882119 ~ 24902428 (-) True AMCG00013204
TU53293 other downstream 1059644 23844083 ~ 23847477 (-) True G42749
TU52837 other downstream 3392428 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 3492157 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 3531358 21337067 ~ 21375763 (-) True G42381
TU53519 other upstream 113321 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 162838 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 251428 25163983 ~ 25166758 (-) False AMCG00013223
TU53711 other upstream 603525 25516080 ~ 25516963 (-) True G43070
TU53964 other upstream 1643799 26556354 ~ 26557324 (-) True AMCG00013264

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050693 True 2496 mRNA 0.43 9 NC_007114.7 57997996 ~ 58006133 (+)