RNA id: AMCG00013212


Basic Information

Item Value
RNA id AMCG00013212
length 906
RNA type mRNA
GC content 0.59
exon number 1
gene id AMCG00013212
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24920301 ~ 24921206 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGCCCAGGGAGGACCCTACCTAAACGTGGCGGCAGTGGCTTCCCCAGTAGGCGTTGCACGACTGGGGCAGATGATTCTGGGTTGCACCACGCTGAGTCTAGTGACCCACCAAGCGGGGTACAGCGCAGCCTACGGGACCTTCTGCATGTTTGTGTGGTGCTTCTGCTTTGCGGTGACCGTGCTGGTCTTCATGCTGGACTTCACCCGGCTGCACAGCTGCCTGCGCATCTCCTGGGACAACTTCACCATCGCCTTTGCCATGCTGGCCACGCTCATGTACGTCACGGCCTCTGTAGTCTACCCCCTGTACTTCCTGCGCTCCGAGTGCCCGTACAACGGCTGTGAGGTGCGCAACTACCGCATCGTTGTCACCGTCTGCTCCTGCCTCTGCACCCTGGCCTACGGCGCAGAGGTCTTTTTCACGAGGGCCAAGCCGGGTCATGTGGTGGGCTACATGGCCACGGTCTCAGGACTGCTGAAGATCGTCCAGGCCTTCGTGGCCTGCATCATCTTCGGTGCCCTGGTCAATGACAGCCAGTACAGCCGCCACATCGCCACCCAGTACTGCGTGGCAGTCTACAGCTTCTGCTTCACCCTCACAGTGATCGTGGTGATACTCACCGTCTCCGGCAAGACCTCAGCGCTGCGATGCCCCTTCGATCGTTTCGTGGTCATCTACACCTTCCTGGCTGTCTTGCTGTACCTGAGTGCCGCCATCATCTGGCCCATCTTCTGCTTTGACAAGAAGTACGGCAACCCCAGCAGGCCTTCCAGCTGCCCACAGGGAAAGTGCCCCTGGGACAGCCAGTTGGTGGTGGCCATCTTCACCTACATCAACATGGTGCTGTACATCATTGACCTGGTCTATTCTCAGAGGATCCGCTTTGTAGCTCAGACCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53483 lncRNA downstream 38246 24879641 ~ 24882055 (-) False AMCG00013204
TU53359 lncRNA downstream 697563 24220651 ~ 24222738 (-) True G42800
TU53312 lncRNA downstream 1003277 23912791 ~ 23917024 (-) True G42760
TU53287 lncRNA downstream 1018381 23901443 ~ 23901920 (-) True G42743
TU53294 lncRNA downstream 1072824 23845405 ~ 23847477 (-) False G42749
TU53601 lncRNA upstream 124172 25045378 ~ 25051849 (-) True G42993
TU53604 lncRNA upstream 158332 25079538 ~ 25082029 (-) False G42993
TU53605 lncRNA upstream 158332 25079538 ~ 25082029 (-) False G42993
TU53608 lncRNA upstream 158332 25079538 ~ 25082029 (-) False G42993
TU53610 lncRNA upstream 158332 25079538 ~ 25376323 (-) False G42993
AMCG00013210 mRNA downstream 7746 24907121 ~ 24912555 (-) True AMCG00013210
AMCG00013204 mRNA downstream 32160 24882117 ~ 24888141 (-) False AMCG00013204
AMCG00013207 mRNA downstream 43307 24869297 ~ 24876994 (-) True AMCG00013207
AMCG00013208 mRNA downstream 51135 24863175 ~ 24869166 (-) True AMCG00013208
AMCG00013206 mRNA downstream 57745 24845630 ~ 24862556 (-) True AMCG00013206
AMCG00013211 mRNA upstream 5931 24927137 ~ 24943446 (-) True AMCG00013211
AMCG00013216 mRNA upstream 104532 25025738 ~ 25028956 (-) True AMCG00013216
AMCG00013217 mRNA upstream 109385 25030591 ~ 25031773 (-) True AMCG00013217
AMCG00013224 mRNA upstream 178145 25099351 ~ 25111435 (-) True AMCG00013224
AMCG00013223 mRNA upstream 240951 25162157 ~ 25166773 (-) True AMCG00013223
TU53481 other downstream 17873 24882119 ~ 24902428 (-) True AMCG00013204
TU53293 other downstream 1072824 23844083 ~ 23847477 (-) True G42749
TU52837 other downstream 3405608 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 3505337 21411939 ~ 21414964 (-) False AMCG00013137
TU52823 other downstream 3560194 21350660 ~ 21360107 (-) True G42375
TU53519 other upstream 104670 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 154187 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 242777 25163983 ~ 25166758 (-) False AMCG00013223
TU53711 other upstream 594874 25516080 ~ 25516963 (-) True G43070
TU53964 other upstream 1635148 26556354 ~ 26557324 (-) True AMCG00013264

Expression Profile