RNA id: AMCG00013216


Basic Information

Item Value
RNA id AMCG00013216
length 1044
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00013216
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25025738 ~ 25029004 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGttcaaaaaagtaaatgtttacgTTTGTATATTTAGaagaacatatattttatacacctgtaAAATAGCACGATTATAAAACAGCTCATACATTAATCAGTATTAAAGTACCGAATGGAATAGGTTTTATAACTTGAATGAAACCTTTGAAATGGGGCAATAGCCTAATGTACGTGTATTGAATgcctttataaaaatataaaacgaCCGTTTAAATGAATACTTTTCAGGAAACTGTCAGCAAGCTGCTTTCAATGTCCTTCAAAGATGAGAAGACCAGAGTGGGCGCTGATGCTGTTATCCTGATGGCCGAGATGCTGAAGGTCTTCGTTCAAGCTTTTAGACTTCTAGTGTTTACACTGCTGGGCCACCGGAGGGCGCTGGTGTTCTGCTcctggagggagagggatgtcCTGCAATGACAGCCTCAGTCACATTTCCACGGACAAACCTATTAGTTGCTCCATTAAAAGCAATTCATCACAAACATGAATATAGCAGTGTATTAATCCAACAGTCCGTAAAGgatagaaataaatgtttatgaatTTCACATTGAAGTTGTAAAAACCTTAGGAAACAAAAACCAAAGCAGTTTTCTCCTGTAAATAGTCTAACTAAGATAgtcatgtatatatacatttgtcagtgtattgtttgattaaatatgattctgcattttctttgatAAAGTGAggcctttttttgttgttttaacgTATTTCAACACGCCAGCCTCCTCGGGCTCTGTTTGTAGTAAAAGTGCAGTGGACAGCAGGTGGTCCTGTTAGCAGGCGCTTGAACTGTAGAGCGACTCGCGCCTGTGAATTTGCTGTTTCAGTGGCGGGAAACGCAGTTGGAGACGGAGCACcacatgtattaaatacacattttacgAATCTCAAAAGGaccattgtgtttatttgaagaACTCTCACGAGAACCCTGAATATCACCTGGGATAACGTGcctttgtgtaatttgttcCGGTCCTCCAGGGCTGGGTAGGGTTACTATAGTAGTGGGGGTGCCAGAAGATGC

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0044237 cellular metabolic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0032991 protein-containing complex cellular_component

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes
ko03018 RNA degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53483 lncRNA downstream 143683 24879641 ~ 24882055 (-) False AMCG00013204
TU53359 lncRNA downstream 803000 24220651 ~ 24222738 (-) True G42800
TU53312 lncRNA downstream 1108714 23912791 ~ 23917024 (-) True G42760
TU53287 lncRNA downstream 1123818 23901443 ~ 23901920 (-) True G42743
TU53294 lncRNA downstream 1178261 23845405 ~ 23847477 (-) False G42749
TU53601 lncRNA upstream 16422 25045378 ~ 25051849 (-) True G42993
TU53604 lncRNA upstream 50582 25079538 ~ 25082029 (-) False G42993
TU53605 lncRNA upstream 50582 25079538 ~ 25082029 (-) False G42993
TU53608 lncRNA upstream 50582 25079538 ~ 25082029 (-) False G42993
TU53610 lncRNA upstream 50582 25079538 ~ 25376323 (-) False G42993
AMCG00013211 mRNA downstream 82292 24927137 ~ 24943446 (-) True AMCG00013211
AMCG00013212 mRNA downstream 104532 24920301 ~ 24921206 (-) True AMCG00013212
AMCG00013210 mRNA downstream 113183 24907121 ~ 24912555 (-) True AMCG00013210
AMCG00013204 mRNA downstream 137597 24882117 ~ 24888141 (-) False AMCG00013204
AMCG00013207 mRNA downstream 148744 24869297 ~ 24876994 (-) True AMCG00013207
AMCG00013217 mRNA upstream 1635 25030591 ~ 25031773 (-) True AMCG00013217
AMCG00013224 mRNA upstream 70395 25099351 ~ 25111435 (-) True AMCG00013224
AMCG00013223 mRNA upstream 133201 25162157 ~ 25166773 (-) True AMCG00013223
AMCG00013235 mRNA upstream 328724 25357680 ~ 25358501 (-) True AMCG00013235
AMCG00013233 mRNA upstream 356783 25385739 ~ 25418578 (-) True AMCG00013233
TU53481 other downstream 123310 24882119 ~ 24902428 (-) True AMCG00013204
TU53293 other downstream 1178261 23844083 ~ 23847477 (-) True G42749
TU52837 other downstream 3511045 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 3610774 21411939 ~ 21414964 (-) False AMCG00013137
TU52823 other downstream 3665631 21350660 ~ 21360107 (-) True G42375
TU53623 other upstream 46437 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 135027 25163983 ~ 25166758 (-) False AMCG00013223
TU53711 other upstream 487124 25516080 ~ 25516963 (-) True G43070
TU53964 other upstream 1527398 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 2244273 27273229 ~ 27293073 (-) True AMCG00013295

Expression Profile