RNA id: TU53519


Basic Information

Item Value
RNA id TU53519
length 823
RNA type TUCP
GC content 0.44
exon number 5
gene id AMCG00013216
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25025738 ~ 25029004 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAAACGAGTTCATTCTGTTGAAAATGGAGGACAGAGGAGAGGGCGCCGCGttcaaaaaaGAAACTGTCAGCAAGCTGCTTTCAATGTCCTTCAAAGATGAGAAGACCAGAGTGGGCGCTGATGCTGTTATCCTGATGGCCGAGATGCTGAAGGTCTTCGTTCAAGAGGCTGCAGTGCGATCGGTGAAACAGGCAGAAACTGAAGGCTGTGACAACATTGACGTCGAACACTTTGAAAAGGTGCTGCCACAGCTGCTTTTAGACTTCTAGTGTTTACACTGCTGGGCCACCGGAGGGCGCTGGTGTTCTGCTcctggagggagagggatgtcCTGCAATGACAGCCTCAGTCACATTTCCACGGACAAACCTATTAGTTGCTCCATTAAAAGCAATTCATCACAAACATGAATATAGCAGTGTATTAATCCAACAGTCCGTAAAGgatagaaataaatgtttatgaatTTCACATTGAAGTTGTAAAAACCTTAGGAAACAAAAACCAAAGCAGTTTTCTCCTGTAAATAGTCTAACTAAGATAgtcatgtatatatacatttgtcagtgtattgtttgattaaatatgattctgcattttctttgatAAAGTGAggcctttttttgttgttttaacgTATTTCAACACGCCAGCCTCCTCGGGCTCTGTTTGTAGTAAAAGTGCAGTGGACAGCAGGTGGTCCTGTTAGCAGGCGCTTGAACTGTAGAGCGACTCGCGCCTGTGAATTTGCTGTTTCAGTGGCGGGAAACGCAGTTGGAGACGGAGCACcacatgtattaaatacacattttacgAATCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53483 lncRNA downstream 143821 24879641 ~ 24882055 (-) False AMCG00013204
TU53359 lncRNA downstream 803138 24220651 ~ 24222738 (-) True G42800
TU53312 lncRNA downstream 1108852 23912791 ~ 23917024 (-) True G42760
TU53287 lncRNA downstream 1123956 23901443 ~ 23901920 (-) True G42743
TU53294 lncRNA downstream 1178399 23845405 ~ 23847477 (-) False G42749
TU53601 lncRNA upstream 16374 25045378 ~ 25051849 (-) True G42993
TU53604 lncRNA upstream 50534 25079538 ~ 25082029 (-) False G42993
TU53605 lncRNA upstream 50534 25079538 ~ 25082029 (-) False G42993
TU53608 lncRNA upstream 50534 25079538 ~ 25082029 (-) False G42993
TU53610 lncRNA upstream 50534 25079538 ~ 25376323 (-) False G42993
AMCG00013211 mRNA downstream 82430 24927137 ~ 24943446 (-) True AMCG00013211
AMCG00013212 mRNA downstream 104670 24920301 ~ 24921206 (-) True AMCG00013212
AMCG00013210 mRNA downstream 113321 24907121 ~ 24912555 (-) True AMCG00013210
AMCG00013204 mRNA downstream 137735 24882117 ~ 24888141 (-) False AMCG00013204
AMCG00013207 mRNA downstream 148882 24869297 ~ 24876994 (-) True AMCG00013207
AMCG00013217 mRNA upstream 1587 25030591 ~ 25031773 (-) True AMCG00013217
AMCG00013224 mRNA upstream 70347 25099351 ~ 25111435 (-) True AMCG00013224
AMCG00013223 mRNA upstream 133153 25162157 ~ 25166773 (-) True AMCG00013223
AMCG00013235 mRNA upstream 328676 25357680 ~ 25358501 (-) True AMCG00013235
AMCG00013233 mRNA upstream 356735 25385739 ~ 25418578 (-) True AMCG00013233
TU53481 other downstream 123448 24882119 ~ 24902428 (-) True AMCG00013204
TU53293 other downstream 1178399 23844083 ~ 23847477 (-) True G42749
TU52837 other downstream 3511183 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 3610912 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 3650113 21337067 ~ 21375763 (-) True G42381
TU53623 other upstream 46389 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 134979 25163983 ~ 25166758 (-) False AMCG00013223
TU53711 other upstream 487076 25516080 ~ 25516963 (-) True G43070
TU53964 other upstream 1527350 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 2244225 27273229 ~ 27293073 (-) True AMCG00013295

Expression Profile