RNA id: AMCG00013217


Basic Information

Item Value
RNA id AMCG00013217
length 873
RNA type mRNA
GC content 0.44
exon number 2
gene id AMCG00013217
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25030591 ~ 25031773 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCTCCTTGGAGCAGGTCCTTCATTGCATATTCTTTCTGGGTTACATTCATGAGAGGCAAGATAAAAAGAAGCCAATTGAACCACGGGAGTTCTTCTCCTCTGATGGAATATATGAGAGGTTTCAGAAGCTATTCCCTCAGGCTTTCGAGCAGTACCGCACTCATTGGCCAACCCGGACACCCTTTTCCATTCTCCTGGATTTGCATTTAGAGGACATCAGGAAAGGAATGGTGgtggacaaaaacaaagatgaccagtgtgaaaataattactgtTTAGTGGCAAGTGTTATCAGTGTCTGCTACTTCCAGGAAGACATGAAAAGGAGTTCTCCAATTTATTATGGAGCTTCGCTGTCTTGTAGTGGTAGAGTGGAGACTCAGGTAATGATTACGCTGTCTTGCATTAAGACCTGGAATGATGCTGTAGCCCATGCGGTCTGGCATGGTAAAAGTGGAAATATCATTAGGCTTCCCAACGGTGTGATCTGTATGGCCTATAAAATGAAATTACCACGTGGTTCCTACTTGGAGGAATCGCCCTGTGTGAAGTGCCATAGGATATTCCAGAACATTGACTTCATACCTGTGTACACGGAAAGTGACAAAACGCAAGACTGGCATTATGGGAACTGTGCCGAAAATGAGTCTCTGAGCAACCTCCTGAATGGAGAGGAGAGGGTCAGGAATGAAACGGTTGCATACCGTCATTATGAAGAACAGGACAGTCACTCACTTCAGGAACAGGTACCTCTTGACAGAGCAGAGATTGTAAACCAAGCGAAGAAGAAAGCAGCCCAGTTGCTCAATTCACGAGGGTTTAAAATCAAAGATGATGAAATAGAATCAAAGTTCTTCCATCCAAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53483 lncRNA downstream 148536 24879641 ~ 24882055 (-) False AMCG00013204
TU53359 lncRNA downstream 807853 24220651 ~ 24222738 (-) True G42800
TU53312 lncRNA downstream 1113567 23912791 ~ 23917024 (-) True G42760
TU53287 lncRNA downstream 1128671 23901443 ~ 23901920 (-) True G42743
TU53294 lncRNA downstream 1183114 23845405 ~ 23847477 (-) False G42749
TU53601 lncRNA upstream 13605 25045378 ~ 25051849 (-) True G42993
TU53604 lncRNA upstream 47765 25079538 ~ 25082029 (-) False G42993
TU53605 lncRNA upstream 47765 25079538 ~ 25082029 (-) False G42993
TU53608 lncRNA upstream 47765 25079538 ~ 25082029 (-) False G42993
TU53610 lncRNA upstream 47765 25079538 ~ 25376323 (-) False G42993
AMCG00013216 mRNA downstream 1635 25025738 ~ 25028956 (-) True AMCG00013216
AMCG00013211 mRNA downstream 87145 24927137 ~ 24943446 (-) True AMCG00013211
AMCG00013212 mRNA downstream 109385 24920301 ~ 24921206 (-) True AMCG00013212
AMCG00013210 mRNA downstream 118036 24907121 ~ 24912555 (-) True AMCG00013210
AMCG00013204 mRNA downstream 142450 24882117 ~ 24888141 (-) False AMCG00013204
AMCG00013224 mRNA upstream 67578 25099351 ~ 25111435 (-) True AMCG00013224
AMCG00013223 mRNA upstream 130384 25162157 ~ 25166773 (-) True AMCG00013223
AMCG00013235 mRNA upstream 325907 25357680 ~ 25358501 (-) True AMCG00013235
AMCG00013233 mRNA upstream 353966 25385739 ~ 25418578 (-) True AMCG00013233
AMCG00013240 mRNA upstream 461604 25493377 ~ 25504516 (-) True AMCG00013240
TU53519 other downstream 1587 25025876 ~ 25029004 (-) False AMCG00013216
TU53481 other downstream 128163 24882119 ~ 24902428 (-) True AMCG00013204
TU53293 other downstream 1183114 23844083 ~ 23847477 (-) True G42749
TU52837 other downstream 3515898 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 3615627 21411939 ~ 21414964 (-) False AMCG00013137
TU53623 other upstream 43620 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 132210 25163983 ~ 25166758 (-) False AMCG00013223
TU53711 other upstream 484307 25516080 ~ 25516963 (-) True G43070
TU53964 other upstream 1524581 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 2241456 27273229 ~ 27293073 (-) True AMCG00013295

Expression Profile