RNA id: AMCG00013219


Basic Information

Item Value
RNA id AMCG00013219
length 2184
RNA type mRNA
GC content 0.53
exon number 15
gene id AMCG00013219
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25121576 ~ 25133716 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCTGACCCCCTGTGGGGACGTGGAGTTTTTGCGTCTGGTATCAGGTAAACACTCTCGTCTCTGCACCACCGCCAATCTGAGCACAGCTAAGAAAGCGAGGCAGTTGAGCAGACCCTCGTTCTTCACCTCTGCGTTCTGTGTCGATGCAGATGAGAGCACCGCCTCGGCCTTGTCTGAGGAGTCCTGCAGCTACCACCAGACCGACATCTTCACCCAGCTCCCCAGCTCCAAGTCCCTGCGCCGCAGAACGGGCAAGAGGGAGCCTGTTGGGGTGGCtgaggaggcagagagacagaaggaggagggggaggaggaggaagaggaggaggagagccaTTGGCCCATCGCCACCAGAGAATGGGATGCCAAACAGCCTCTCCGATCACTCCCCCTCTCCATGACTGAGAAGAGAGTTACCAGGGATGcgcggcagcagcagcacagcagcatcAACTGCTGGGAGTCGTGGAAGCGCAGCCAGCGCACGTCGAGGCGGCGGCTGCAGGAGAACCTGGCGGAGGCGCTGTGGAGCCTGCAGCTGTGGAGGAGCACCCTGCACCGCATCGAGGGTAAATTTGGTTCAGGTGTGAagtcatattttacatttcttcgCTACTTGGTGTACCTGAACATGATGCACTGCCTCATCACTGGGGGGTTATTGGTGGGTATTTTGGGGCGCTCTGCTCTCTTCTATGGATTCTACAGGAGGGGCACCCTGGACACTGCCTGCCTCAACATCCCTCTGTTCTTTCTGCTcaacatttttgtaattctgTTTGTCAGTCTGGTCTTTGTTGTGAGAAGGATGGTCAATAGCTACAAGATGAAATGGATGCTGGCAGACCGTTACAAGGTGACAACGTGCTACAAAATGTTCTGCGGCTGGGACTTCTGCATCCAGGATGCCAGCTCCGCCTCGCTCAAACAGAGCAGCTTCTTAAATGACCTGAAAGTGGatctggaggaggagaaattTCTTCAGCAAGTGTCTCGTCGGACAGTAAAGCAGTGGGCTCTGATCTATGTTGTTCGTGTCGTCCTGAACTTGGTCGTCCTGATCCTGCTCTCTGGAGCATTCACCTTCATTTACTTTGCCACCAAGGTCTCCCAGAAACCCCAGGAAGATAAAAGCTGGATCTTCAACCTCGTGTTGCAGTACCTCCCATCGATCACCATCACCCTCGTCAACTTCCTGCTGCCGCACATGTTCCGCGGTATCGCCAAGTTTGAGGAGTATTCCCTCACTGTCCAGGTCAACATCACCTTGGTGAGgaGCATCTTCCTGAAGCTAGCCAGTCTTGGGATGTTCCTGTTCTTTCTCTGTCAGCAGATTCTATGCATAGGAAAATCCAAGCAATGTAGCAAATGtgaaaggtgctgggaaaatgtatttggccAGGAGATGTACAAGCTGATGATGTTTGACTTTCTGGCTTGCATTGGGCACACTTTCCTCACTGGATACACAAGAAAGTACTTGGTGGAAAAGTGCTCGTGGCGCCTGGTGCAGAAGATTGGGAAGCCGCAGTTCCTCATCCCGCTGAACGTACTGGACATTGTGTACAATCAGACTGTCACCTGGGTAGGACTGTTCTACACTCCCCTGATGCCCCTTCTCCTCGTTCTCAAGCTGATCATCATTACATGTGAGCCAGCCAGGCGGATGTTTCGGCCATCCAGTTCCTCCGTGTTGTTCCACTTCATGCTGCTGTTGGGTCTCCTGATGTTCCAACCCTCCGATGTCTGTGGGCCATTCCAAGGCAGTCTCCAAGTCCTCAATGTGGTAGCCACGTGTCTGAACAGCCTACCCACAATTGCCAAAAATGTCCTTTTCTACCTCATGTCTGAGGCCTTTGCTATCCCCTTGCTGTTGACAGAGATTATTCTCCTGACGTCCTACATATCTTTGGCCACAGCGAACCGTAAAACCATGGAGAGACTGAAGGACAGACTTGTGCTGGAAAGTTTCGATAAGAGATACCTGGTGAAAAACCTCTCtgctgtggacaaaaaaaagagaaagaaccAGAAGGGACATACCTCAGCAATGAGCAGGGCGGATGTTCCATGGAAGGACCATATTGACCCCTTGGAGTTACAGCCCGGTCTGAGCAGAGGGGTCAGTGTGGAGATGGGGGTGGAGAGCAATACATCCCCCCCTGAGTCGTGCCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53533 lncRNA upstream 1768 25089170 ~ 25119808 (+) False G42950
TU53535 lncRNA upstream 29858 25089170 ~ 25091718 (+) False G42950
TU53500 lncRNA upstream 105210 24991455 ~ 25016366 (+) True G42925
TU53494 lncRNA upstream 194831 24924791 ~ 24926745 (+) True G42922
TU53473 lncRNA upstream 239518 24879764 ~ 24882058 (+) True G42906
TU53701 lncRNA downstream 374475 25508191 ~ 25511347 (+) True G43062
TU53704 lncRNA downstream 378492 25512208 ~ 25512901 (+) True G43063
TU53705 lncRNA downstream 388762 25522478 ~ 25524992 (+) True G43064
TU53719 lncRNA downstream 454763 25588479 ~ 25592334 (+) True G43078
TU53720 lncRNA downstream 460655 25594371 ~ 25594607 (+) True G43079
AMCG00013213 mRNA upstream 40290 25079676 ~ 25081286 (+) True AMCG00013213
AMCG00013214 mRNA upstream 67940 25045382 ~ 25053636 (+) True AMCG00013214
AMCG00013215 mRNA upstream 130314 24973717 ~ 24991262 (+) True AMCG00013215
AMCG00013209 mRNA upstream 163993 24954971 ~ 24957583 (+) True AMCG00013209
AMCG00013202 mRNA upstream 321843 24798327 ~ 24799733 (+) True AMCG00013202
AMCG00013222 mRNA downstream 2153 25135869 ~ 25139723 (+) True AMCG00013222
AMCG00013220 mRNA downstream 8253 25141969 ~ 25150662 (+) True AMCG00013220
AMCG00013218 mRNA downstream 19764 25153480 ~ 25160902 (+) True AMCG00013218
AMCG00013221 mRNA downstream 33061 25166777 ~ 25175997 (+) True AMCG00013221
AMCG00013227 mRNA downstream 46386 25180102 ~ 25194919 (+) True AMCG00013227
TU53419 other upstream 351428 24768424 ~ 24770148 (+) True G42858
TU53407 other upstream 372181 24747492 ~ 24749395 (+) True G42846
TU52922 other upstream 2875786 22242429 ~ 22245790 (+) True G42453
TU52771 other upstream 3634768 21484907 ~ 21486808 (+) False G42344
TU53706 other downstream 386451 25520167 ~ 25521681 (+) False AMCG00013236
TU53847 other downstream 1121263 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 1391110 26524826 ~ 26540049 (+) True G43263
TU54005 other downstream 1674448 26808164 ~ 26811615 (+) True G43309
TU54155 other downstream 2024586 27158302 ~ 27158721 (+) True G43434

Expression Profile