RNA id: AMCG00013223


Basic Information

Item Value
RNA id AMCG00013223
length 1979
RNA type mRNA
GC content 0.43
exon number 7
gene id AMCG00013223
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25162157 ~ 25166773 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGGACGTTCGACTTTGTCACTGAACGGGGGTTCCCTCTGATTAGGCGTCTCTGCaggtttaacttattttttgaatgttatattgtaatttataattattattgtaattattttgtgtactaGCACTTGAACAAAGATGGACTGCTTGAACGTGCCAGAAATTATGCCCAATTCTCCCAGGAAAACGAGGGGACAAATTCAGGTTATTTTCGGGCCGATGTTCTCCGGAAAAAgCACCGAGTTGATGCGCAGGGTGCGGCGCTTCCAGATCGCACAGTACAATTGTCTGGTCATTAAATATGCCAAAGACACCCGATACTCCGACAGCGGGATGGCAACCCACGATAGGAGCACGATGGAGGCAGTGCCAGCCAATCAGCTAAAGGATGTATACACACTGGCTATGGAGAGCTCTGTCATCGGCATTGACGAGGGCCAGTTTTTCCCTGACACAGTAGAGTTTTGTGAGGAAATGGCCAACAGGGGCAAGACCATCATCGTAGCAGCACTGGACGGGACATTCCAGAGAAAGCCATTTGGGAATATCTTGAACCTGGTGCCGCTGGCTGAGAGCGTGGTGAAGCTGCATGCAGTGTGCATGGAGTGCTACAGGGAGGCTGCCTACACGAAGAGGCTGGGGGCAGAGAAAGAGGTGGAGGTGATCGGAGGGGCAGATAAATACCACGCTGTGTGCAGAGCCTGCTATGGCGTGTTGCAGATGCAGGGGAAGGAGAATGGTGTGCCCCAGCTGAGGAGGGAGGAGACCCCTCCCCACACTCTGCCTGGGAAACCGCTGGACCCCAGAGTGCCCCGGAAGCTGCTCGGGACACTCCAGCTCTAAGCGTTGGGTTGCCTACCGCTGGTTCAACTAGAGCGTGTTTCAAATggactaatttattttctagaGATAGATCTGCCACTAAAAGGGGCACTCTGTAAGAGGATTTACTGTTGTAATATATGGATATGAagggtttttaaaaaaaaacgcaaAGGGAGTGTGGGCTGGGGGGGGCGGTTAGTGTTGAAAGCATGTGATAAAGTATGTTAAcaggtttatattttcaaatgaaaatgaacagatTCCAAACCCCATTCTACATCTAATTTGAAGGTTTGTCTTGTATCCCCTTTAGAAAGCACACAAGTGGCAGGGATGCTTGTGTTTTACGACCAGAAAAGGGCTCTTCAGTCACAAATTGATAGTGTGCTGGTCATAGTATACAGTATGTGTCATGTAGAGTCTTATATTTAGACTTTTTTAAGTATCCCATAACAGATGAGTGATAGAAAACTTAGAACAATATATATGAAGTTTTATTAATCTATTGCCAAACCTTTGgaatgaataacaataattgGCTGTTAAACAGGAGAAACTTTGGAAAAAGACAACATATTGTAGCTAAAATATGTGACCACATTCCAGTCCTTGAAGAATGCACCTTAATCTTATTAAGGCATTTCTCTCCCTAAAAAGGTTAGAACTTGGAACGCTTATAAACTTGAAAAATTGTAGCCTGTTACACTGCAAGATCTACAGTACTGACAAACTTCAAAAGTAGACAGACGCTGTGACCTCTGGGTGAATTGGACTCAAAGAGCATGGGGGCATTACTGTGTGAAAGATGTATGCAAGATCTCTGAGTGAGACTCCACTACAATACCAGCTAACTACCATAAACTCACTGCCAAGGTCATCATTTCAGAGCTTTTCCTTGTGTGTaatgtctattttaaaatgcactgtgtgtctgtgttgaaaatgtaaatgattgtacatattttaaataaaatgccgTAGTAAACTGCCAAAGGTTTCTTGTGATCTTAGTTTCTGTTACAATAAAAAGCCTTTGTAAACTCGCTATGATTCATTTTAAGAACTTCCAGGTCCTGATACCAGATTGTAAACTTCTGCTATTTGTCAGTGGGAACAAAGTCAAGGGACTTTTTTCTCGATTTGGAGAATgttgt

Function

GO:

id name namespace
GO:0009157 deoxyribonucleoside monophosphate biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0006260 DNA replication biological_process
GO:0004797 thymidine kinase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K00857 tdk, TK; thymidine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53637 lncRNA downstream 22414 25136776 ~ 25139743 (-) True G43011
TU53604 lncRNA downstream 80128 25079538 ~ 25082029 (-) False G42993
TU53605 lncRNA downstream 80128 25079538 ~ 25082029 (-) False G42993
TU53608 lncRNA downstream 80128 25079538 ~ 25082029 (-) False G42993
TU53601 lncRNA downstream 110308 25045378 ~ 25051849 (-) True G42993
TU53674 lncRNA upstream 122697 25289470 ~ 25351738 (-) True G43040
TU53680 lncRNA upstream 199493 25366266 ~ 25424074 (-) True G43042
TU53682 lncRNA upstream 200825 25367598 ~ 25369063 (-) True G43044
TU53713 lncRNA upstream 352038 25518811 ~ 25519993 (-) True G43072
TU53741 lncRNA upstream 421141 25587914 ~ 25588261 (-) True G43100
AMCG00013224 mRNA downstream 50722 25099351 ~ 25111435 (-) True AMCG00013224
AMCG00013217 mRNA downstream 130384 25030591 ~ 25031773 (-) True AMCG00013217
AMCG00013216 mRNA downstream 133201 25025738 ~ 25028956 (-) True AMCG00013216
AMCG00013211 mRNA downstream 218711 24927137 ~ 24943446 (-) True AMCG00013211
AMCG00013212 mRNA downstream 240951 24920301 ~ 24921206 (-) True AMCG00013212
AMCG00013235 mRNA upstream 190907 25357680 ~ 25358501 (-) True AMCG00013235
AMCG00013233 mRNA upstream 218966 25385739 ~ 25418578 (-) True AMCG00013233
AMCG00013240 mRNA upstream 326604 25493377 ~ 25504516 (-) True AMCG00013240
AMCG00013238 mRNA upstream 341424 25508197 ~ 25512871 (-) True AMCG00013238
AMCG00013239 mRNA upstream 359869 25526642 ~ 25537475 (-) True AMCG00013239
TU53623 other downstream 83913 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 133153 25025876 ~ 25029004 (-) False AMCG00013216
TU53481 other downstream 259729 24882119 ~ 24902428 (-) True AMCG00013204
TU53293 other downstream 1314680 23844083 ~ 23847477 (-) True G42749
TU52837 other downstream 3647464 21512084 ~ 21514693 (-) False AMCG00013133
TU53711 other upstream 349307 25516080 ~ 25516963 (-) True G43070
TU53964 other upstream 1389581 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 2106456 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 2401991 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 2901440 28068213 ~ 28072787 (-) True G43594

Expression Profile