RNA id: AMCG00013224


Basic Information

Item Value
RNA id AMCG00013224
length 2358
RNA type mRNA
GC content 0.53
exon number 18
gene id AMCG00013224
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25099351 ~ 25111435 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCATAACGTCAACTTTAATCTGGATGTCCATGAAATGGAGTCTGGGATAGAAAGCCCTTTGACTCCCTTGGATGAGAATGTGGTTCATGACTCCTTCACCCAGTTGATCCAGGAGCAGAGTCACTCTCAAGAGGGACTGGATTGTATTGAGATGAGCGAGATGATGGAGGGGGCCAAAGATAACGCAGCCTACCTGGCCAGCCCAGATCACCACGACGGCAGAgggcagaggcagagggaggACCGTACTGAAGAGGCCCTGCAAGAGAATGACCCAATGTTGAGCGAGCACTTCTCCTCAGCCACACTCAGGGTGCTGTCTGCCATGCCCAGCCGCACCATCGGTCGTAACCGCGGAGCCATCATCTCTCAGTACTACAACCGCACCATGCAGCTGCGCCGGCGCCGGCAGAGCAGGCCCTCGGTGCGTAACCTCTCGCGCTCCTCCAGGCCCAGTATCCGCGGATATGGCATGGAGACGGATGGCGGGGACACCGACCAGGAAGCCGAAAAGAGAGCACGCCTGGTCGTCAACCTGCAGAACTTGTCGGCCAGCGATCGCATCCGCATGCTGCGCACCATGCCCCTCAGCCTGTCTGAGAAGCGTGACCTCAGGTACGGCTTGCCCCCACCCCTTCAATCAATCTTTACATTGCCAGCTGGGCCAGGCCAGATCAAATACTACTTCATCATTGGCCTGCGACAGGGCTGGTACAGCTGGCTGTCCTTCCTTCACTCCCTGCAGCTGTGGCAGATGGCGCTGAAGAGGGTGAGCGGGCGCTTCGGGACGGGCGTGCTCTCCTACTTCGTCTTTCTCAAGACCCTGCTGCTCTTCAATATCTTCCTATTCCTGGTCAACCTCTTCTTCCTGGTCATCCCACAGCTGGTCCACCCTCCATCTGACCAGAAAAGCACACCCTTTACTGGGCTAGAGCTGCTCACCGGAGTGggCTACTTCTCAGAGACTGTTATGTTTTATGGTTACTATACCAACTCTACCATAAATAGCTCTCAGAACAGTTCTGTTGTCAACAATACACTCGACAGTAAAGCCACAGCTCCAAGCTTGGCCTACAGCATGCCCCTGGCCTACTTCTTCACCATTGGTGTCTCCTTCTTCATCACCTGCATCTGCCTCGTCTTCAGCATGTCCAAGTCCTTTGGTGAGAGTTACCGGATAGACGCAGCTCAGGGAGACCTGGCCATGAAGGCGTTCTGTTCCTGGGATTTCAAGGTCATTAAGAACACTTCTGTGAATCTGCAGCATGAGAACATCTCCACTCAGCTGAAGGAGGTGCTGTCTGAGCTGGCATGcaggaaggagaagaagagtGTGCTGCAGAAGCTGGCACGGTTGGCTGTGCATCTGCTGGCCTGGTCCATGTGTCTTGGCAGCACCCTGGCCTGTGCACTGGCCATCTACTACTTCTCCATTTACATGCACCAGGACCTGGAGAGGAGATCAAAAACGACAAGCCAAAGTCCCCTATTGAAGGAGGCCAGCCTCCTGGCTCTGCCTGTGGTGGTGTCTAGTATAAACCTGCTAATGCCCGGCTTCTTCAACACTGTCGCCTGGATGGAGGAATATGATTCGCCCAATTGCTGGGAGACCTTTGTTGGACAGGAGCTGTATCGTTTTCTGTTAATGGACTTCATCTTCACCATCCTGGACACTTTCTTTGGAGAATTCCTTTGGAAGCTGTTTTCGCAGAGAGTGCTAAAGAGGAAAAGGAAGCCAGTATTTGACATCGCCCGCAATGTGCTGGAGCTAATCTACGGGCAAACACTTGCCTGGCTGGGGGTCCTGTTTTCTCCATTGCTTCCTGCAATGCAGATTATCAagctctttcttttattttatatgaaagaGACGAGCCTGATGATGAACTGTCAATCTCCCATCAAGCCCTGGAGGGCCAGTCAGATGACCACCATCTTTATCAGCCTGCTGTGTTTCCCCTCTTTCCTGGGGGCAGCTGTGGCTGTCACATTCACCATATGGACGATCCAGCCTTCTGAGTTGTGTGGGCCTTTCCGGACCCTAAACACCATGTTGGAGGCGGGGAAGAAATGGGTAGAGAAGCTGCAAGATACCAACCTGTCCTGGCTCTCTTGGATATACAGCTTCCTGGTGGAGAACCCCTTATTCCTGTTTGTTGCAGGGGGGGTCTTCTTaattgtaatttatttccacACACAAGTGGTTGATGGCCAAAGGAAAATAATCAGCTTACTACAAGagcaaattcaaaatGAAGGCGAGGACAAGAAATTCCTTATCACTAAACTCCAGGCTATCCATGAGCAGAAACGCCCTATTTCTGGGAGGAGATCAGACATGCGGGGCAGTCAG

Function

GO: NA

KEGG:

id description
K21988 TMC; transmembrane channel-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53604 lncRNA downstream 17322 25079538 ~ 25082029 (-) False G42993
TU53605 lncRNA downstream 17322 25079538 ~ 25082029 (-) False G42993
TU53608 lncRNA downstream 17322 25079538 ~ 25082029 (-) False G42993
TU53601 lncRNA downstream 47502 25045378 ~ 25051849 (-) True G42993
TU53483 lncRNA downstream 217296 24879641 ~ 24882055 (-) False AMCG00013204
TU53637 lncRNA upstream 25341 25136776 ~ 25139743 (-) True G43011
TU53674 lncRNA upstream 178035 25289470 ~ 25351738 (-) True G43040
TU53680 lncRNA upstream 254831 25366266 ~ 25424074 (-) True G43042
TU53682 lncRNA upstream 256163 25367598 ~ 25369063 (-) True G43044
TU53713 lncRNA upstream 407376 25518811 ~ 25519993 (-) True G43072
AMCG00013217 mRNA downstream 67578 25030591 ~ 25031773 (-) True AMCG00013217
AMCG00013216 mRNA downstream 70395 25025738 ~ 25028956 (-) True AMCG00013216
AMCG00013211 mRNA downstream 155905 24927137 ~ 24943446 (-) True AMCG00013211
AMCG00013212 mRNA downstream 178145 24920301 ~ 24921206 (-) True AMCG00013212
AMCG00013210 mRNA downstream 186796 24907121 ~ 24912555 (-) True AMCG00013210
AMCG00013223 mRNA upstream 50722 25162157 ~ 25166773 (-) True AMCG00013223
AMCG00013235 mRNA upstream 246245 25357680 ~ 25358501 (-) True AMCG00013235
AMCG00013233 mRNA upstream 274304 25385739 ~ 25418578 (-) True AMCG00013233
AMCG00013240 mRNA upstream 381942 25493377 ~ 25504516 (-) True AMCG00013240
AMCG00013238 mRNA upstream 396762 25508197 ~ 25512871 (-) True AMCG00013238
TU53623 other downstream 21107 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 70347 25025876 ~ 25029004 (-) False AMCG00013216
TU53481 other downstream 196923 24882119 ~ 24902428 (-) True AMCG00013204
TU53293 other downstream 1251874 23844083 ~ 23847477 (-) True G42749
TU52837 other downstream 3584658 21512084 ~ 21514693 (-) False AMCG00013133
TU53641 other upstream 52548 25163983 ~ 25166758 (-) False AMCG00013223
TU53711 other upstream 404645 25516080 ~ 25516963 (-) True G43070
TU53964 other upstream 1444919 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 2161794 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 2457329 27568764 ~ 27569151 (-) True G43473

Expression Profile