RNA id: AMCG00013229



Basic Information


Item Value
RNA id AMCG00013229
length 964
RNA type mRNA
GC content 0.49
exon number 7
gene id AMCG00013229
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25375516 ~ 25384472 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCTGTAGGATGCGCAGCGCGACCCCAGACTCCTGACTCAAGACCAGACCAGACTCCTGAATCAAGATGTAGTGACTAGTGTAGTGCAAGACCAGGAAACTGGAAACGAAAGCACAGAAAGCAgTCCAACATGGAGTGGAACAGCTATGGCTGAAATAAAGGATTGCGTTGAGGACTTTTGCAATCTTACAATCTCCAGCGAATACCTGGAGGAACTCCACAGATTGGTGGAGAAGCACAGAAATAAGACAGTACGTTTAGGTGGCCCATACGAGTACGATCTGACAATTGGTGGACTTGAAGACACAGCGTGGAGTGAGAAGGAATTGAAACTTGAGGACATAGAGGAACTATACCTCCCTGAGAGCGAGAAGATGGTTGTTTTGGGATATATTGATGACTTCGTCATCTTCGAGGATGAAGTACAGTTGGTCGTTACTGCTGATGTCAAGGGGAATGTCTACGCCAATGATGCCGACGAATTATATCATGTGACAACCAGTGTGAAGGACTTCTTCATAACAGGAGTGCCGAAAAGTCCAATCACACGCTACTATAAGGAAGAAATCATTAAGTCAAAGATAAGTGTGAAAACATTTGGATTTGCAGATTTGGAGAAGGTAGAAATGCAAGGGGTGAGGGGAAGTGCCCTGGGCACCTTGGTGTGCTGTATCTATGAGGAGTCTCTGGAGCTCATCCATCTGGAGCTAGTTTTGGGAGCTGGCCAGCTGAAATGGGCCCAGGAGCTCAGAAGACAGGATCCAGAGCCCTATGAGGAGCTTGAGGACAATTCATCATCCGGCAATGCTGCCTACAGAGAGCCCTTACACCCCAACATGGAGATCAGGTTTCTGATCATCACCTCTGAGAAGCTCTTCCACACTGTGGGGAGTTGGAGGCAGCAGGAGGGGCCAGGGTGTCGCgtgaaAGGAATGCTGGACGATATTCGAGAGAGCCTgccagat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU53533 lncRNA upstream 255708 25089170 ~ 25119808 (+) False G42950
TU53535 lncRNA upstream 283798 25089170 ~ 25091718 (+) False G42950
TU53500 lncRNA upstream 359150 24991455 ~ 25016366 (+) True G42925
TU53494 lncRNA upstream 448771 24924791 ~ 24926745 (+) True G42922
TU53473 lncRNA upstream 493458 24879764 ~ 24882058 (+) True G42906
TU53701 lncRNA downstream 123719 25508191 ~ 25511347 (+) True G43062
TU53704 lncRNA downstream 127736 25512208 ~ 25512901 (+) True G43063
TU53705 lncRNA downstream 138006 25522478 ~ 25524992 (+) True G43064
TU53719 lncRNA downstream 204007 25588479 ~ 25592334 (+) True G43078
TU53720 lncRNA downstream 209899 25594371 ~ 25594607 (+) True G43079
AMCG00013231 mRNA upstream 8970 25357317 ~ 25366546 (+) True AMCG00013231
AMCG00013228 mRNA upstream 23778 25331132 ~ 25351738 (+) True AMCG00013228
AMCG00013230 mRNA upstream 51076 25319106 ~ 25324440 (+) True AMCG00013230
AMCG00013225 mRNA upstream 120315 25231148 ~ 25255201 (+) True AMCG00013225
AMCG00013226 mRNA upstream 145500 25207547 ~ 25230016 (+) True AMCG00013226
AMCG00013234 mRNA downstream 37189 25421661 ~ 25423984 (+) True AMCG00013234
AMCG00013232 mRNA downstream 95386 25479858 ~ 25485620 (+) True AMCG00013232
AMCG00013236 mRNA downstream 128881 25513353 ~ 25521520 (+) True AMCG00013236
AMCG00013237 mRNA downstream 167123 25551595 ~ 25554794 (+) True AMCG00013237
AMCG00013243 mRNA downstream 362193 25746665 ~ 25775438 (+) True AMCG00013243
TU53419 other upstream 605368 24768424 ~ 24770148 (+) True G42858
TU53407 other upstream 626121 24747492 ~ 24749395 (+) True G42846
TU52922 other upstream 3129726 22242429 ~ 22245790 (+) True G42453
TU52771 other upstream 3888708 21484907 ~ 21486808 (+) False G42344
TU53706 other downstream 135695 25520167 ~ 25521681 (+) False AMCG00013236
TU53847 other downstream 870507 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 1140354 26524826 ~ 26540049 (+) True G43263
TU54005 other downstream 1423692 26808164 ~ 26811615 (+) True G43309
TU54155 other downstream 1773830 27158302 ~ 27158721 (+) True G43434

Expression Profile