RNA id: AMCG00013232


Basic Information

Item Value
RNA id AMCG00013232
length 2855
RNA type mRNA
GC content 0.49
exon number 7
gene id AMCG00013232
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25479858 ~ 25485620 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACTTGTACAGAAGAGCCGGGGCGGCGCGGGCTCTGCTGCAGCGCCGGACACCCGCTGCTGCTGCCGTGGACAGTGTGTCGGCGCGGCACCCGGCCGCCTGCGGCGCAGCTCCGCTCAGACGCTGTTATAAGCAGCCCGCAGTGCCGGCGCGCTCGGCCGCAGGGCGCACGGTGGACCTCCGCAGCGACACCGTCACCCAGCCCGGGCCGGCCATGCGCCGAGCCATGGCGGAGGCAGAGGTGGGCGACGATGTGTTTGGCGAGGACCCGACGGTCAACAGATCCATGAGCAACCTTATAGCGGTGATGGTGCACTGCAGGGAGCGAGGTGCCGAGATCATTGTTGGAGATCAATCACACCTGCATATCTACGAGCAAGGTAGCAGCGCTCAGTGTGCTGGTGTCCACTCCACTACTGTGACCAACCTCCCCGATGGGACCTTTGACCTGGAGGAAGTAGAGGCCAAGATCAGACATGGCTACCCCGACGCACACTACCCCAGCTCTCGCCTCATCTGtgtggaaaacacacacaacatccaGGGGGGTCGCATCCtgcctctctccttcctccGGGAGTTGCGCTTAATGGCTGACCGGTACGGCCTGGCTGTTCACATGGATGGGGCCCGGCTGATGAATGCAGCAGTGGCATTGGGTGTGCAGCCTGCAGACATCCTTCAGTACTGCGACACTGTGAGCGTCTGTCTGTCTAAGGGACTGGGCGCTCCGGTCGGCACTCTCCTGGGTGGGCCAAGGGAGTTTGTACAGAGGGCAGTGCGCGCCCGCAAGGCCCTGGGCGGGGGGATGCGGCAGAGTGGTATTCTGGCAGCGGCTGGTATCATAGCACTGACAGACATGGTGTCCAGGCTGGAGGAGGATCACAGGAATGCCAAGACGTTTGCCCAAGCACTCCTACAGAGCGACCCTCCTCTCTACCAGGTGGAGATGAGCCACGTGGAGACCAACATCCTGCGGTTCCGGCTCTGTGATCCCCGGCTGACCCCGGAGGAGTTCTGCGAGAGGATGGCGGCGGTGGGCAGCAGGGAGGCGGGGGCGCTGGGGCAGGAGGTGCGGGTGCTAATGTTTCCTCATGTGGGGCGGTCGGTGAGGGCCGTGTGGCACCTGGGCATCAGCCGAGAAGACACCCAACTCGCCATCCAGAAACTGCACTATGTCACCAGGCAGTGTGTAGAGGACAGCCAGAGGGCCTGAACTGCAGAATGACCATTGTTTTTCATGGTCTGCCTGCCAGGAGTCCTCCTGATAGCTGTGGGATGTGCAGAATCAAAGACACAGAAATCTCAGCGATAGATAAAGAAGCGTTGCAGGACTAtcattatttttcccttttttccattattttgaaatgccaGGTGGTGTCAGAAGCACTTAAGGTTTGTGATGACATGTTATTTTCTGTAGGAAtgcgattaaaaaaaataataatttagtttgcaAGGAAAAATGtcataatgtaattttaattacagtattattaatattaatattacatttcctttcGAACAACTGAAGAAGGGATTGGTTTTCAAAGTGCCTAGAGCTACGCAGTTCATAGGCACAAGCAGCCTGGGATATGGAATATGAGTAATGAAGAGCAGGGCTGGACAGCTAGACCACAGTGTGCGAGGGCCCGGTGCTCTCTGCCTGGGCTCTGTGTACACAGTGTGCTCCGAGTGTGGTTCAGGTCACTGCCTGAGAAAACACTTTCACAATAACGCTCTCCATCAGCACATTATGACAGCTGGAGACCTGATCTTTTGGTTTAAGTTTCAGGAACCAGGCAATTACATTGCTTATTTTGTACAAGGTTACATAAAAAGTCATTGTGAGAGCGGGACTCGTTTTGTCCCTGCACACTCCATTTCACATGGGCAATGTTTGTGACCAGGCCTCTGTCAACTGTAGTGAGAACCATTTCGCTAAATGCATCTCTGTCAGCTTTTATCGAAATAAATCTTCAACAGCTTCGTACAAAGCTCGGTAATCTTCAGATGTTATCCGAGTTGCGGTGACCAGGTAGGAGAGGAGTTGTTGGAAGTAATCACAGAGACGACGGTGCCCCAGTAGCCTGCGGAGGTTCACACCCAGAGCAATGGCTGTTGTCTGTAGGTTGCAGGCACCCATTGTTTGCATTGAGTGTGTTCTCATCAGGATATTATTTTTCGGCTCCTGTAGAATTTCAGTCATTTGGttgaatttaaaacacaaaatatttttaatctgatttGATCAAACAATTAATCCGAACCCCACTTATTCAGGGTCATGGGCAATAAAGGAAGGCTTTCATAGCTAATCAAGATTTCATCTCAATGAGTAACTGGAGTAAAAGGTATGAATGCATGCTGTaaaaaagctgttaaaaaaaaaagttttttttaaaccttagTTTTCTTGTAAAAGTCATCAGCAATTGCTATTTGCGAACAtagtatttttcatatattctGAGCTGTCTGATTACAGTATGTGGGATGTGAATCTTTGAAAGCTACCTCAAACATTAATAAACCAGAGCTGTGAACTCAgcagttgttgttgtggtggttactgcagaatataaaatatgtttctttcGGTCACTGAATCTTTCATTTCCAGTGGCAGGTAATAAACAAGGAAGGAGAACCCCCAAAAGACATTTGTACCAACCATATTAGCACCGAGTCTttaaacatggaaataaaatgtcccTGCgactacatttaaatgtattctaatcTGATAGAATGTAAGTTGAATTTCTGTTGTTAACCTGACAGATTGtgttgttatgtttttgtgttatttacttGTAGCCTGTCTTTTATCCatagtaaataaacaaa

Function

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function

KEGG:

id description
K01620 ltaE; threonine aldolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53534 lncRNA upstream 103759 25089170 ~ 25376099 (+) True G42950
TU53536 lncRNA upstream 103759 25089170 ~ 25376099 (+) False G42950
TU53533 lncRNA upstream 360050 25089170 ~ 25119808 (+) False G42950
TU53535 lncRNA upstream 388140 25089170 ~ 25091718 (+) False G42950
TU53500 lncRNA upstream 463492 24991455 ~ 25016366 (+) True G42925
TU53701 lncRNA downstream 22571 25508191 ~ 25511347 (+) True G43062
TU53704 lncRNA downstream 26588 25512208 ~ 25512901 (+) True G43063
TU53705 lncRNA downstream 36858 25522478 ~ 25524992 (+) True G43064
TU53719 lncRNA downstream 102859 25588479 ~ 25592334 (+) True G43078
TU53720 lncRNA downstream 108751 25594371 ~ 25594607 (+) True G43079
AMCG00013234 mRNA upstream 55874 25421661 ~ 25423984 (+) True AMCG00013234
AMCG00013229 mRNA upstream 95386 25375516 ~ 25384472 (+) True AMCG00013229
AMCG00013231 mRNA upstream 113312 25357317 ~ 25366546 (+) True AMCG00013231
AMCG00013228 mRNA upstream 128120 25331132 ~ 25351738 (+) True AMCG00013228
AMCG00013230 mRNA upstream 155418 25319106 ~ 25324440 (+) True AMCG00013230
AMCG00013236 mRNA downstream 27733 25513353 ~ 25521520 (+) True AMCG00013236
AMCG00013237 mRNA downstream 65975 25551595 ~ 25554794 (+) True AMCG00013237
AMCG00013243 mRNA downstream 261045 25746665 ~ 25775438 (+) True AMCG00013243
AMCG00013244 mRNA downstream 292292 25777912 ~ 25784972 (+) True AMCG00013244
AMCG00013248 mRNA downstream 307785 25793405 ~ 25796522 (+) False AMCG00013248
TU53419 other upstream 709710 24768424 ~ 24770148 (+) True G42858
TU53407 other upstream 730463 24747492 ~ 24749395 (+) True G42846
TU52922 other upstream 3234068 22242429 ~ 22245790 (+) True G42453
TU52771 other upstream 3993050 21484907 ~ 21486808 (+) False G42344
TU53706 other downstream 34547 25520167 ~ 25521681 (+) False AMCG00013236
TU53847 other downstream 769359 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 1039206 26524826 ~ 26540049 (+) True G43263
TU54005 other downstream 1322544 26808164 ~ 26811615 (+) True G43309
TU54155 other downstream 1672682 27158302 ~ 27158721 (+) True G43434

Expression Profile