RNA id: AMCG00013234


Basic Information

Item Value
RNA id AMCG00013234
length 396
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00013234
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25421661 ~ 25423984 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTAACCCACAGCAAGTTTGACTCCGCGATGAGCAGCAGCCCCTTTGACGCAAACATGCGGCTGCCACCTCACCGCTACAAGACCTTCAGCTCCAAGGTGCAGTACCAGCTGATCCTGACTGCCATACGGAAGCTACAGGAAAGCGGCTTCTACTGGAGCTCTGTGAGCGGCAAGGAGGCCAACAGCCTGCTGAGCTCCGAGCCCGCTGGCACGTTCTTGATACGGGACAGTTCGGATAACCGGCACTTCTTTACCCTCAGTGTCAAAACCGCCTCCGGGACAAAGAACTTGCGGATTCAGTGTGACAGCTGCTCCTTTTTTCTTCAAACTGACCCCAAAAATTCCACCTTAATGTCCAGCCTGATGACTGGTGATACAAGCTTGAagatctga

Function

GO:

id name namespace
GO:0007259 receptor signaling pathway via JAK-STAT biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K04696 SOCS3, CIS3; suppressor of cytokine signaling 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53534 lncRNA upstream 45562 25089170 ~ 25376099 (+) True G42950
TU53536 lncRNA upstream 45562 25089170 ~ 25376099 (+) False G42950
TU53533 lncRNA upstream 301853 25089170 ~ 25119808 (+) False G42950
TU53535 lncRNA upstream 329943 25089170 ~ 25091718 (+) False G42950
TU53500 lncRNA upstream 405295 24991455 ~ 25016366 (+) True G42925
TU53701 lncRNA downstream 84207 25508191 ~ 25511347 (+) True G43062
TU53704 lncRNA downstream 88224 25512208 ~ 25512901 (+) True G43063
TU53705 lncRNA downstream 98494 25522478 ~ 25524992 (+) True G43064
TU53719 lncRNA downstream 164495 25588479 ~ 25592334 (+) True G43078
TU53720 lncRNA downstream 170387 25594371 ~ 25594607 (+) True G43079
AMCG00013229 mRNA upstream 37189 25375516 ~ 25384472 (+) True AMCG00013229
AMCG00013231 mRNA upstream 55115 25357317 ~ 25366546 (+) True AMCG00013231
AMCG00013228 mRNA upstream 69923 25331132 ~ 25351738 (+) True AMCG00013228
AMCG00013230 mRNA upstream 97221 25319106 ~ 25324440 (+) True AMCG00013230
AMCG00013225 mRNA upstream 166460 25231148 ~ 25255201 (+) True AMCG00013225
AMCG00013232 mRNA downstream 55874 25479858 ~ 25485620 (+) True AMCG00013232
AMCG00013236 mRNA downstream 89369 25513353 ~ 25521520 (+) True AMCG00013236
AMCG00013237 mRNA downstream 127611 25551595 ~ 25554794 (+) True AMCG00013237
AMCG00013243 mRNA downstream 322681 25746665 ~ 25775438 (+) True AMCG00013243
AMCG00013244 mRNA downstream 353928 25777912 ~ 25784972 (+) True AMCG00013244
TU53419 other upstream 651513 24768424 ~ 24770148 (+) True G42858
TU53407 other upstream 672266 24747492 ~ 24749395 (+) True G42846
TU52922 other upstream 3175871 22242429 ~ 22245790 (+) True G42453
TU52771 other upstream 3934853 21484907 ~ 21486808 (+) False G42344
TU53706 other downstream 96183 25520167 ~ 25521681 (+) False AMCG00013236
TU53847 other downstream 830995 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 1100842 26524826 ~ 26540049 (+) True G43263
TU54005 other downstream 1384180 26808164 ~ 26811615 (+) True G43309
TU54155 other downstream 1734318 27158302 ~ 27158721 (+) True G43434

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1282233 True 2543 lncRNA 0.49 2 NC_048576.1 92333180 ~ 92335751 (-)