RNA id: AMCG00013236


Basic Information

Item Value
RNA id AMCG00013236
length 5153
RNA type mRNA
GC content 0.50
exon number 10
gene id AMCG00013236
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25513353 ~ 25521681 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATACAGTTGACACGCAGTCTATGAGAATGGCAGGCGAGAGGTGTTCCGTGGATTACCTGGCCACGTTTCAGTGCCCGTCACGCCTAGCCCAGGTGGTCTGCCGAGGGACTGACGTCATTCTGTGTAACGGGGGTGAACGTgctgtttttgtttttggtggcCGTGTTAAACAGCTGGCGAAGAGTCTGGATGGGCAAAGTGTCTACGCTCTGTGTGAAAATGATGGGATTTACTGCATTTCCCTGCAGCAGCACAGGAGGAAGCTCCCATCCTCACCCTGTGAAGGAGACACCCTGGTTCAGCTGGAGGTGTCCCCTGATTCCTGTGCACTCAGAGACCCAGCTGTCTGCTCCTTCTCTGTACTGGAGGAGGTATTGGTGGCAGTGGCATGGGGTGGCCATATGTGGAAAATCAGTTTTTATAAGCTCCCTGAGAGTCCCATGACTTCCTGTAGAAAGCTAGAAGAGCTGCAGGTCCCCATTCTTTCTACAGGTTGCCCCAGCATTGGAGCTGAGGACAGGGGTAAGGATAAGGACGTGCCTCCGTCTCTGTGCTGTATATACCCCAGTGGAGCCAGTCCAAAGCCCTCAGAGGGTGACGGTCTCTACTCCCTGGAGCCCATTCTTTTTGGGTTGCTCTTTGGCGTGGACGCAGCCCTGCTCTCCTCCCCCGTCATCTTGTGCGGCCTGCCCGACGGGCGGCTGTGCTGCCTGCCTGTGCGACTTCCAGGGAAGCCAGGGGACGGGGTTGAAGAGCGCAGAGTGAAGATGCTCTTCCACCTGGGCCAGCCAGTGGCCTTCATCGGAGCCTCACTGGccagggagaaagagaaagggccCTGCTGCCTGATAGCGGTGGGGAGTAGTGGGAAGGTGTTGCTGGTCAAAGCTGAGGGGGGGGTGGATGGCCGAGTTGCTGAGTTCAAGGAGCGCTGCCTCTCTGGCCCTGTACAGAGTGCATGTCTCAGCAGCAGCCACCTCTATTACAGTACTGGTTCTGATCTACTGGCTCTGCTGCTCGGCTCCCCCGCTCCTGAGGCTGCGGACTTGACCCAGAGGCCAAGCTCAGAGCAGGCTCTGCAGCCCCCAGCCCTGCAGCCCCCCATCAGCCTGAATGTCTGCGGCCTCCTTGCTTTGACCAAACCCACAGAGACGCCTACAGGGGCTGTTCAGCTGCTTGCTTTTTCTCTCAGAGGGAGGCTGCTGAGGGTAACTCTGCCCAAGAGGCCAGGTAGTGGTCATGGGGTCAAGCTGTCCGCAGCACAGGTTGGCCAGAAAATGAAGGACCTTCTTGCTGGCATTGGAAATGTCTCGGATAGAGTTTCCACTTTGAAAAGGCGCGTTCAGGAAAAGAATGACGCCCTGAGGAGCCTTAACCAGGTTTTCAACATCTGCTGCTTGCTGATACCAAATCAAAAGCAGGGAGAGGATGGAGCTCCCCGTTGCAAGTGCCCAATCAGCTGCCGCATTGCTGCCAGGTGGAGCCGCTTACTGCAGCAGGACTCTCTGCTTCTGAGCTGCTTTCTAGAAAACTCCAGTGACTATGTTCTAGAACATGGCTGGACACTTTGTATACAAGTGTTCCCCCCGCCTTACCCTTTGACCCCTAAGGGTGAAGGTTCATTCAGAACTTATTCCTTTCCCTTTGATAAACTGTTGCCGGGTCAAAATCTGGAAGTGACCCTACCGCTGGCTACGGACAGTGAGTTATCATTGCCTGTGTCCGTCTGCTGCTCCCTGACTTACACTTTGCCAAGCATCCTGAGACAGGAGGGAGATGGGCGGTCTCTGAGCACCAGCACACCCCTCTGCCAGCTGTTGAAAGATGGCGGCTGCATTAGCCTGACTGTGGACACCTTCATAGTGGACTGGTTGGACTGTCTGTGGATCAATGGTTCTGCAGCTGAAGGGGGGAGCTCGAGGTCCAAGTCTGGCTCCCCTGCAGACCCAGTCCAGACCCTCCTGAGCTCTTCCAGAAATGTCCCTGGACAGACCTGGGACCATACTCCTTTGAGAACAGCAGCACGTCTCGCTTCAGACAGGGGACCTTATCTCGCGTCCCTCAGAGTGTCTTCAGAGCTGCTGAAAACTGCACTGAAAATCTCCACCCCAGGCCCCCCGTTGTCGATTGCCACTCTGTGCTGGCTGGTGTCCAGCAACCTTGGAGGGGAGTTGGCTCGTCAGGACTGCCCCCTGCTGTCTGCGGTCTGTCCCGGAGGGGCCACACTGAGACTGCTGGCCAAAGAGGTGAGCGTGACTGATTTTTGTGCCGATGGACCAATCACCACTGTGGAGATCCAGATCGAGAGCTCTTCGTTGGCTGAACTGTGTGGGCTTCATCATGCGGTGTTGCGCCGTGTCCAGACCCTGTTGAAGGAGGGGGTCCCGGATGCTGGCGCTGTGCCACGGTTACAAAGACAGCGCCTGGGGTGGCTCTTGCAGCATGCTGAGGCTCTGTCTGAGGCAGTTCAGGAGGCTCGCGGACACAATGCCCTGGGTTTGGGGATGTCGAGTGGGACAATGGAGAGATTGCTCTCCGCCTACCAGCAGCTGAGGAACTGCCCCCTACTGATCCTCTGAGGGCCTGCTCTGGGGTGCTGAAGGCAGCCGCCATGCCCCATGTAGCCAGGGAGTGGACTGCCCTGGATTATTGCATGTCTCTCTCCACACCGGATTATCACTGCAACCACCTGTAAAGCTGTAGAGGTGTGTGGTGCGAAGGCAGGTATGTCACATAGGATTGCATGAAACAACCAATCCTTTTAGGGGAAAGAACCACCCGCACTGACATCTGTTAAAAAACGCTAAGAAGACTGACCGCATTCAAAGCAGCCCCTACATGTCAGTCCCCAAGAGGGATCCTTTAGTACGAGGGTTAATGGGTGAATCTGTCAGATTGTCCAAAGTCCGACGTGCAAAACACAAGTGCAGTACAACCTATGCGGGACACTTACTCCGCAGTCATGCGGTTTGGACCTTGCCAAAGCATTGCAGTTTAATCAGCCTTAAGCTTCTTATTAAACTTGTAATCAAGGACACATGCCATCTCTTTCACCTCCTGCACACATCCAGATTTTTTCCTTAACCATGGGACTAGAACaaatgcagtaataataaatcattcaatGATATGAAGATGACATCATCCAAACCCGTGCGGTGCATTGTGCCTTATTCCACACAGACCATGTAGGAAACTAAAATATCGGAGAGGACAATTGAAATAGAAGGCTGCAGGCAGTTCACCAAGTCATTTTCTACTGCAGAGCTGCTCTGTTGTGTGCTAGTCAAATAATCAGCATGTGTtggattgtgttgtgtgtgagagtccAAGCGAGTGTAACAGGTGCCGCAGTCAGGTTGTCTACCTGAGTGTGAGGCATGGCTGAGGTGGAAATATTATAATGCTGCTgggcttgtttgtgttttaaggCCATCAGCCTGTActtttttcaattcagtttggCTTCATCTAAATTTAGACACTTCTGTTGTTCCTCCTGTCTTTTAtcgctctatctctctctctgttccaaGTCTAAAAGCATTGTTTACTAATCACAAACATTCCAAGTATTGACATTATCATTATGGGCGGCACAGTGGTATGGGTTTTCTCtaggcactccggtttcctaaCACCGTCCAAATACATGCaagttaggttaattggccatgctaaattgccctgtgtgtgtgtgtgtgtgttgcccagcgatggcctggcatcccgtcctgccttgtgccctatgcctgccgggattggctccggcttccccgcgaccctcaccaggataagcggtttcggaAATCGATGGATggacattatcattattaacaGTTAGTGCTAATGTAGTTAAGTCAGCATGGGATATAGcagacattttaattcagtaaaaCAGGCCCCACATTAAAACATACAGACTTTTTAAGTTATTGGATTCATCAAACCATTAAGTCAACTGTTTGGTCAGAAAATTAGAAGTGCACTAATACAGTTCTCCAGTAGAGGACAGCAGAACCAAGTCCAGCATCAGAATATTTTTTGGTGATGTTCTTTGACATTCCAATTTTATCTTCAAGCCATGGTCTTTGTACACagaaatgtatgcatatgtacACAACTGTTCCTTTATGGCTCCAGAagtggaaaagcaaaacaatgctATCTCTAATCTAGACTGTGTGAACTAGAATTTGGGTCAAAAATTAttatctgacacacacacacacacaacacactgcctCGCTCCACTGAGGTAAAGTGAAATTCTCATATGTAGTCTTTGTAAACCCAGGaatgttgttttaatactttttatagatttatttattttaattacttgcaTTAAACTTCAGCTTTTTGAACCTTCTAGGCACTCTTAATTAACccctgcttttgctttttaactCACCATGTAAGGGTTAACAAATAAGTGTCAACACATGTTGTACTGCATTTGCACACTCACGGTTGATGATCATTTGCCTGGTTGATTCCCAGCATGCTGCTGAATGCGGATAAACCACTCTGGGTCTCCAGTCATATGCCTTAAGTCACTCCACCCCTGTGAATTACCTGGTTGCGGATCAATCTTTCTTCCTGCTCATCTGCACGATCTAGTCTTCCATGTTATTTACCAGAAGATAAAATGTATGATAAAATACCATTGAATTTACCTGAAGATGACCAACCATGACTTGCACATAGACTGTAAAAGGAGACGGATACGTTTCAACAATGCATAGGTTCCTTTGTAGAAATGTGGGATGCGTCAAATATTGGGATTCACTCAAGATTTTTCGTTCTCCAGAAAAAGGCCATAAAAACAgcagatgtgtttttaaaaggaggAATTCTGAAAAGGGGAAGAACATAGATCTCTGCACACACTCCCCGTCTCCTCTGCCCCAGTACTCCACTTCTTGTCTTGTCAGAATCTTACCCCCCACCCTTGTATGCATTCCATGTTCTGGGACACTGTTGAAAACTGTCTGCTATTTATCAAGAAACTGCTCAATCATCCTGAATGAAATGCTTCAGGGGATTAATCTCCTGAGTCATGTTTTTGtggatttttccattttaaataaaaaaaacagcaacatccGCCCACCTTCTCTTGTGAAGACAAACTGGTAGAGTAAAC

Function

GO: NA

KEGG:

id description
K10993 FAAP100; fanconi anemia core complex 100 kDa subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53704 lncRNA upstream 452 25512208 ~ 25512901 (+) True G43063
TU53701 lncRNA upstream 2006 25508191 ~ 25511347 (+) True G43062
TU53534 lncRNA upstream 137254 25089170 ~ 25376099 (+) True G42950
TU53536 lncRNA upstream 137254 25089170 ~ 25376099 (+) False G42950
TU53533 lncRNA upstream 393545 25089170 ~ 25119808 (+) False G42950
TU53705 lncRNA downstream 958 25522478 ~ 25524992 (+) True G43064
TU53719 lncRNA downstream 66959 25588479 ~ 25592334 (+) True G43078
TU53720 lncRNA downstream 72851 25594371 ~ 25594607 (+) True G43079
TU53721 lncRNA downstream 73177 25594697 ~ 25595941 (+) True G43080
TU53722 lncRNA downstream 79293 25600813 ~ 25601177 (+) True G43081
AMCG00013232 mRNA upstream 27733 25479858 ~ 25485620 (+) True AMCG00013232
AMCG00013234 mRNA upstream 89369 25421661 ~ 25423984 (+) True AMCG00013234
AMCG00013229 mRNA upstream 128881 25375516 ~ 25384472 (+) True AMCG00013229
AMCG00013231 mRNA upstream 146807 25357317 ~ 25366546 (+) True AMCG00013231
AMCG00013228 mRNA upstream 161615 25331132 ~ 25351738 (+) True AMCG00013228
AMCG00013237 mRNA downstream 30075 25551595 ~ 25554794 (+) True AMCG00013237
AMCG00013243 mRNA downstream 225145 25746665 ~ 25775438 (+) True AMCG00013243
AMCG00013244 mRNA downstream 256392 25777912 ~ 25784972 (+) True AMCG00013244
AMCG00013248 mRNA downstream 271885 25793405 ~ 25796522 (+) False AMCG00013248
AMCG00013251 mRNA downstream 634235 26155755 ~ 26161064 (+) False AMCG00013251
TU53419 other upstream 743205 24768424 ~ 24770148 (+) True G42858
TU53407 other upstream 763958 24747492 ~ 24749395 (+) True G42846
TU52922 other upstream 3267563 22242429 ~ 22245790 (+) True G42453
TU52771 other upstream 4026545 21484907 ~ 21486808 (+) False G42344
TU53847 other downstream 733459 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 1003306 26524826 ~ 26540049 (+) True G43263
TU54005 other downstream 1286644 26808164 ~ 26811615 (+) True G43309
TU54155 other downstream 1636782 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 1864145 27385665 ~ 27415286 (+) True AMCG00013298

Expression Profile