RNA id: TU53706


Basic Information

Item Value
RNA id TU53706
length 1515
RNA type TUCP
GC content 0.38
exon number 1
gene id AMCG00013236
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25513353 ~ 25521681 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aagcggtttcggaAATCGATGGATggacattatcattattaacaGTTAGTGCTAATGTAGTTAAGTCAGCATGGGATATAGcagacattttaattcagtaaaaCAGGCCCCACATTAAAACATACAGACTTTTTAAGTTATTGGATTCATCAAACCATTAAGTCAACTGTTTGGTCAGAAAATTAGAAGTGCACTAATACAGTTCTCCAGTAGAGGACAGCAGAACCAAGTCCAGCATCAGAATATTTTTTGGTGATGTTCTTTGACATTCCAATTTTATCTTCAAGCCATGGTCTTTGTACACagaaatgtatgcatatgtacACAACTGTTCCTTTATGGCTCCAGAagtggaaaagcaaaacaatgctATCTCTAATCTAGACTGTGTGAACTAGAATTTGGGTCAAAAATTAttatctgacacacacacacacacaacacactgcctCGCTCCACTGAGGTAAAGTGAAATTCTCATATGTAGTCTTTGTAAACCCAGGaatgttgttttaatactttttatagatttatttattttaattacttgcaTTAAACTTCAGCTTTTTGAACCTTCTAGGCACTCTTAATTAACccctgcttttgctttttaactCACCATGTAAGGGTTAACAAATAAGTGTCAACACATGTTGTACTGCATTTGCACACTCACGGTTGATGATCATTTGCCTGGTTGATTCCCAGCATGCTGCTGAATGCGGATAAACCACTCTGGGTCTCCAGTCATATGCCTTAAGTCACTCCACCCCTGTGAATTACCTGGTTGCGGATCAATCTTTCTTCCTGCTCATCTGCACGATCTAGTCTTCCATGTTATTTACCAGAAGATAAAATGTATGATAAAATACCATTGAATTTACCTGAAGATGACCAACCATGACTTGCACATAGACTGTAAAAGGAGACGGATACGTTTCAACAATGCATAGGTTCCTTTGTAGAAATGTGGGATGCGTCAAATATTGGGATTCACTCAAGATTTTTCGTTCTCCAGAAAAAGGCCATAAAAACAgcagatgtgtttttaaaaggaggAATTCTGAAAAGGGGAAGAACATAGATCTCTGCACACACTCCCCGTCTCCTCTGCCCCAGTACTCCACTTCTTGTCTTGTCAGAATCTTACCCCCCACCCTTGTATGCATTCCATGTTCTGGGACACTGTTGAAAACTGTCTGCTATTTATCAAGAAACTGCTCAATCATCCTGAATGAAATGCTTCAGGGGATTAATCTCCTGAGTCATGTTTTTGtggatttttccattttaaataaaaaaaacagcaacatccGCCCACCTTCTCTTGTGAAGACAAACTGGTAGAGTAAACAGCACTTGCAAAACATTCCTGAGCAAGGCCATCTCTTTAACCCTCTTGCTCCAGTTATGGCTCCCCCCTCCTCTTTCCCAAGggtacaaagaaaaacaaatattttatagttgttgtttttttgttttattcatcagttgttttggaaatgttgtAGTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53704 lncRNA upstream 7266 25512208 ~ 25512901 (+) True G43063
TU53701 lncRNA upstream 8820 25508191 ~ 25511347 (+) True G43062
TU53534 lncRNA upstream 144068 25089170 ~ 25376099 (+) True G42950
TU53536 lncRNA upstream 144068 25089170 ~ 25376099 (+) False G42950
TU53533 lncRNA upstream 400359 25089170 ~ 25119808 (+) False G42950
TU53705 lncRNA downstream 797 25522478 ~ 25524992 (+) True G43064
TU53719 lncRNA downstream 66798 25588479 ~ 25592334 (+) True G43078
TU53720 lncRNA downstream 72690 25594371 ~ 25594607 (+) True G43079
TU53721 lncRNA downstream 73016 25594697 ~ 25595941 (+) True G43080
TU53722 lncRNA downstream 79132 25600813 ~ 25601177 (+) True G43081
AMCG00013232 mRNA upstream 34547 25479858 ~ 25485620 (+) True AMCG00013232
AMCG00013234 mRNA upstream 96183 25421661 ~ 25423984 (+) True AMCG00013234
AMCG00013229 mRNA upstream 135695 25375516 ~ 25384472 (+) True AMCG00013229
AMCG00013231 mRNA upstream 153621 25357317 ~ 25366546 (+) True AMCG00013231
AMCG00013228 mRNA upstream 168429 25331132 ~ 25351738 (+) True AMCG00013228
AMCG00013237 mRNA downstream 29914 25551595 ~ 25554794 (+) True AMCG00013237
AMCG00013243 mRNA downstream 224984 25746665 ~ 25775438 (+) True AMCG00013243
AMCG00013244 mRNA downstream 256231 25777912 ~ 25784972 (+) True AMCG00013244
AMCG00013248 mRNA downstream 271724 25793405 ~ 25796522 (+) False AMCG00013248
AMCG00013251 mRNA downstream 634074 26155755 ~ 26161064 (+) False AMCG00013251
TU53419 other upstream 750019 24768424 ~ 24770148 (+) True G42858
TU53407 other upstream 770772 24747492 ~ 24749395 (+) True G42846
TU52922 other upstream 3274377 22242429 ~ 22245790 (+) True G42453
TU52772 other upstream 4033359 21426660 ~ 21486808 (+) True G42344
TU53847 other downstream 733298 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 1003145 26524826 ~ 26540049 (+) True G43263
TU54005 other downstream 1286483 26808164 ~ 26811615 (+) True G43309
TU54155 other downstream 1636621 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 1863984 27385665 ~ 27415286 (+) True AMCG00013298

Expression Profile