RNA id: AMCG00013240


Basic Information

Item Value
RNA id AMCG00013240
length 630
RNA type mRNA
GC content 0.60
exon number 4
gene id AMCG00013240
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25493377 ~ 25504516 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACTTCGGCGCAGTGGTGGTCCTGGCCGGCCTCACCGGGCTGCTGAGCTTCAGCCTGCTGGCCGCGGCGCTGGGCAGCGAGCACTGGTACCTGGTGGAGGTGCGCGGCGAGAACGGCACCCGGGCGGAGGAGCTGGGCTCGCACTCCGGGCTGTGGAGGACCTGCGAGGGTAAGAATGCCTGCTTCCCTCTCAACAACCCTTTCGATGCAGACACCTCCAATTTCTCAGACCCCATCAGACACTTAACCACCTTGCACAAGGTGATTGTCATCCTGCTGCCCCTTAGCCTGGTGTTGCTGGTGTTCGGGGGGATCTGCGGCCTCGTCAGCTCACTGGCCAGGAGCTGTCCCCTGCTACTGGGCAGCGGCTCCTACATCCTCCTGTGCAGTTTTCTCACCCTGGCTGGCCTGAGCATATACATCAACTACTCCCGCCTGGCGCTAGAGGAGATGGTTGACATGGTGGGGGAAGAACGCATGGCCAGCGTCCATGTTGCTTTTGGCTGGTCTATGGGCGTGGCTTGGCTGTCCTTCATCCTGGAGGTCATCACAggctttctgttgttgtttgggGCCAGGCTCACCAAGTTACACCACCAGTCTGTCCCAGCCATTTCGCTGACATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53680 lncRNA downstream 69303 25366266 ~ 25424074 (-) True G43042
TU53610 lncRNA downstream 117054 25079538 ~ 25376323 (-) False G42993
TU53682 lncRNA downstream 124314 25367598 ~ 25369063 (-) True G43044
TU53674 lncRNA downstream 141639 25289470 ~ 25351738 (-) True G43040
TU53637 lncRNA downstream 353634 25136776 ~ 25139743 (-) True G43011
TU53713 lncRNA upstream 14295 25518811 ~ 25519993 (-) True G43072
TU53741 lncRNA upstream 83398 25587914 ~ 25588261 (-) True G43100
TU53740 lncRNA upstream 83971 25588487 ~ 25592462 (-) False AMCG00013241
TU53777 lncRNA upstream 271858 25776374 ~ 25777679 (-) False AMCG00013245
TU53779 lncRNA upstream 271858 25776374 ~ 25777723 (-) True AMCG00013245
AMCG00013233 mRNA downstream 74799 25385739 ~ 25418578 (-) True AMCG00013233
AMCG00013235 mRNA downstream 134876 25357680 ~ 25358501 (-) True AMCG00013235
AMCG00013223 mRNA downstream 326604 25162157 ~ 25166773 (-) True AMCG00013223
AMCG00013224 mRNA downstream 381942 25099351 ~ 25111435 (-) True AMCG00013224
AMCG00013217 mRNA downstream 461604 25030591 ~ 25031773 (-) True AMCG00013217
AMCG00013238 mRNA upstream 3681 25508197 ~ 25512871 (-) True AMCG00013238
AMCG00013239 mRNA upstream 22126 25526642 ~ 25537475 (-) True AMCG00013239
AMCG00013241 mRNA upstream 87943 25592459 ~ 25628252 (-) True AMCG00013241
AMCG00013242 mRNA upstream 180953 25685469 ~ 25685725 (-) True AMCG00013242
AMCG00013245 mRNA upstream 271884 25776400 ~ 25777647 (-) False AMCG00013245
TU53641 other downstream 326619 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 415133 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 464373 25025876 ~ 25029004 (-) False AMCG00013216
TU53481 other downstream 590949 24882119 ~ 24902428 (-) True AMCG00013204
TU53293 other downstream 1645900 23844083 ~ 23847477 (-) True G42749
TU53711 other upstream 11564 25516080 ~ 25516963 (-) True G43070
TU53964 other upstream 1051838 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 1768713 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 2064248 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 2563697 28068213 ~ 28072787 (-) True G43594

Expression Profile