RNA id: AMCG00013241


Basic Information

Item Value
RNA id AMCG00013241
length 8991
RNA type mRNA
GC content 0.60
exon number 28
gene id AMCG00013241
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25588487 ~ 25628252 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAACAGATTCTTCCCAGGAATGGATACCGGTCCTACAGGAGCTCCTAAAGTCTCTCTTGCTCCACTCCCCAGGGTATCCCCGCTTTTCAGGGAGTCTGGCCTCCACCTTCCTTCCCATGAGCCATCTGGATCACCATGGCAACAGCAGCGTTCTCTATCAGCAGCACCGTTTCTATGACACCCAGAAAGATAACTTCTACCTAAGAAGCCTACCCTCACAGCCGGCTCTGctctcagccaatcacagcttCCCGCCCATCTCTCGGGCGGCGCCGGGGCACCCGCTGGGGTCCTGCAGTCGAGAACGGGACtcagggggaggagggggcgcGCTGCACAAGAGCCTgaaggaggggggggtggaCCGGGGGGTGGTCCTGAGCTCCAAGGAGAAAGACAGGGCCAGCAGCAAGCAGGAGGCCAAGGACAGGCAGCACCATGGGCATCACCAGACGTCCCACCATCACGCCCACCCCCAGCACCCACAGCACCCAGCTtccctggaggaggagagtgcCAGGGCCCTGGAGAGACACAAGGCCAACCTTGCACTGGACTGCAAAGAGGATCCTCTGGGCAGGAGCAAGCACCTCAGCGCCTGCCTGATGAGCGCCAAGATGCTAAACGGGGAGTCTGGAGCCAGCACCAAGGGGTCGCTATCCAGCTGTGGCGGGGGGGGCGGCGGCAATGGCAACACACAGTCCAGGCAGATGGGTGGGGGCAGCGGCGGCCGCTGCTCCAAGGAGGCAGTGAGCGGGGAGATGAGAGTGACCGGACACCTGTCCGACTGCCTGGAGAGCCGCCAGATGCTGCATCACTCCGTCTCCTACTCCGTGCCCCCTCCCCTGTCCATGAGCTCTGCGGCTGGCGGGGGGAACCCAGGGGGGTTTCCCTGTCTGCAGCTGCACCCCagccacccccaccaccctcacCATCCACACCACCACCATCCCGACTTCTACTGCCCCCCACCGCCACCCCCGCTGGCAACCCCATCCACACACGAGAAGGGCTCGGCCAGCAGTGGGCGGGAGCTGAAGATCACGGGGCCCACGTTCGTGCCTTCGGTGGGGCACCTGGGGGACAAGACAAGTGGGCCTTTCCAGCTGGCTAACCCTGACTgccgggggggagggggcggcgGCGCCAGCGGTCCTCCCAGCTCTCAGCCCTCTGAAGGAAAAGTAGTTTCCCagcagggcagcagcagcagtggggGGGGCGGCTGCACTTTACAGCGAGATGGGCAGAAGGTGGCACGAATCAGGCACCAGCAGCACAACAGGTCTGGTGCGGACAGCACAGCCGGGGAACTGGCGCAGGGAAACGGGGGACAGGACATGAAGAGGAAGTTGGAGATGGCATCTCTTGGGTACAGCAACagtgggcagcagcagcagcagcagcagcaacaacccCTGCCTCCTTGGGCGGTACGAGGGCACCAGATCCAAGCAGAGGAGGAACAGCGGAAAGCCTACCTGGACTCTTTCAACAGTGGTGGAAACAGCAGACAGCAGGGGCAGCagaatcaacaacaacagcaagggATGGCTTCCCAGAGTCAGCAGGACTCACAAGGGGCCCAGGGCGAGAGCAGCGCGATGAAGAATCTCCTGAAGTACAGCAATCAGCAGCAGCCGCTCCTGCTATCCCAGAAAAGCCCATTCGGGGGTCTGGGCAGTCTGAAGACGAGCAGCAATGGGAATAGCTGTGCCCATCAGGATGCCAAGCAGACCTTGCCTCCGAGGAAGGGCCCGTCCAGTGAAAACGAAAGGCCAGACTGTGGTGGGCGTGGCCGAGAGGCGGGTGACACTCCCCACGGGGAGGGAGAGGTGCGCCAGCCGCCCGTTGGCATTGCGGTGGCTGTTGCGAGGCAGAGAGAACCTCCCTGCCGCCCTCTGGATGGGCACCCCACCCACAGCCGCCAGGGCAGGGTGTTACCAGCCATGAAAGGAATGCCACGCTCAGTGTTCCCTCTGGACCCCGATGGCGAGGAGGACCGGAAGAGGCTGTGTGAGGACCCGCTGGGCTTGCCCTGCCTGGACCGTGACCGAGAGCTGCTCATCAGGGACAACAAGGATCGAGTAGAATTTGCCAGGATCCATCCCTCTAGCAGTTGCCATGGTGACCTCACCTCCCACCTCATGGTGCCAGGCGGAACTTCTTTGCAAGCTAGCCAATTAGGAGCTGACCCCGCAGCACACGCCCATCCGGCTCATCACCATTGGATGCCACGGACAGGAAGCCCCTCTTTATGGATGCCGGGACACTCTTATGGGATCAGCCATGCAGCTCTGCACCAGAACCTGCCCCCTGGTTTCTCCACGGCGATGCCCAGCCCCCTGCAGCCAGTGTTGCCCATGCCCCAGGACCCCTCCGCCCAGCTGGTCGTGCTGCCCACGGAGCCCGCCACCCACCCCGCCGCCCACCACCTTGACGTGATGGAGCAGCCCTCGCTGTGGCCCCCTGCACAGCGGAAGCCAGAGGACCCCCACATGGAGCTGGATGACTTGCTGTCCCAGCCCAGGACCCCTAAGACTGCCAAGCCTTTCTCCTTTGCCCCTTCCAACAAAAGTGTTCCTTCTCCAGGGGCCTGTGGCGCCAGGCTGTCTCCCTGCTGTCGCTCCCCGTCCCTACGGCCGCACCCCAAGAGCACTCCCTGCACCCCATGCCCCGCCCCCAGCCCGGCTGCCGCCCCCCGCTCCCCCGCTCTGAGCCCGGCCCCTCCCCACGCCTCCAAGGGGGCGGAGTCGCAGGATAAGAGAGGGGAAGGGCAGCCACCGCAGGACTACCCACAATCCCTGGAGCCTGACCTGCCACCTGGATACACTTACCCAGCCATCCCCATGGGCTACAGCAGAGGCCCCACCCCCCAGGACGTGCGATTGGCAGAGCCAGCTGACTTGGAGGCCGTGCAGGCGGAGCCGGCCGAGCCCACCCCCAGGCCACTCCCCTCAGTGGGGGAGGAGTCTGAGTGTGAAGAGGTCGTGACCCCAATGCGGATATtagaggtggaggaggagcctaaaacgGTGGAGTCTGGGGGGGGTGTGGAAGGGGGTGAGACTGTGAGCTGCTGCACGCCCACTGAGCTGGAGCAGGGTGGGCTGTTCACCTGCACGGTAGCTGAGGGGCAGATCTTGGAGACCCCCGCCCCCTGCCCCTCACCCCCCGTCTCTCCTTCCGCGGCTCAGCCGAACGCAGGGGTCTCCTTGGAGTGCGAAGGAGAGAGCAGCCTGGCCGAGGAGAGACGGGCGGAGCAGGAGAAAGAGGACGAGAATGAAGGAGGctcagaggagagagaggaggaggtgtACGAGGACACGGCTCCCTGCAGCCCCGCTGACATCCCCCCTGCCGAAGAGGCAGGCGATGAAGCAGCCCTGGACTGTGGGAGGAAAACCCCCAGTGAAGCCTCTGTGGAACTGCTGAGCAGCCCACCTCCCCCCCAGTCTGACACCCCCAGCCACAGGCCTTCGGAGGTCTGGGCCCCCACCTCTTCTCCGACAGACTGGTCACCTGTCCCCAGCAGCAGCCTGGAGCTGCTGATCGCGGCCGCCCTCTGTGCGGAGAAAGACGCCCCCCCTCTTCCACACAAAACCCAGCTGTTGTCCTGCGGCGCACAGCCCGGCCTCAGCACCCGCGGCATGGAGCTGCTGAGCGAGCTGGCAGACCTGGAGCTGCAGCAGCGCCGGAAGAGCGCAGGACACAGCCAAGGGGAGGAGCTGTTGATCTTTGACCTGCAGAGCCTGGCTACGTTGGCAGCCGCTCGCTCTCTGGAGATGGGCTCCTTGGGGGGCAGCGGGGTGGGCCTAGGGCGGCACTGCCCAGTGCGGCGTGCTCTCAACCTGCGAAGGAAGTTCAGCTGGACGCCACGACATGAGCCGGTGTGTCCAGTGAAGAGCGCTATGGAGGCCATGGATGGGCAGGAGCTGGCCATGCGGGTCAGGCTGGCAGAACTGCAGCGGCGCTACAAGGAGAAGCAGCGGGAGCTGGCCAGGCTGCAGAGGAAGCACGACCACCAAAAAGAGGAGACGTCCCGTAGCCCTGCTCGGCGGGGGCCAGGACGGCCCCGCAAGCGCAAGTCCACCCCTGGAGGGACTGTGGCCCCAGCAGAGGCCCCCAAGAGAGTCAAGTCTTTGGGGGCGGGACTTGGTCTATTGTGTGAGGACTTGCGAGGCGGAGGAGAGACccagaggaagaagaagaagctggCCAACCGGGGCTTTGAGCGCCTCAACACAGCACAGATTAAGTCACGGTGCTGCAAACAGAGCGGTCGACAGGGGACACTGAGCTCCAAGCTGGCCAGGAAGGTGTCTCAGCTGAAGCAGAAGGCCAAGGTGAAACGGGGGGCCCCAGCAGGCACGCCATTCCGGCGGAGGGAACCCCCACCCCAAAGCTCTGCTACTCCGAGGTTGGGCCGCGGACAGGGGCTCCCCAGACCTGAGGAAAAGCATGCAGCCAGCAGAGCGGAGCGCAGCGGGCAAGATAGCTGGGCAGGGAGAATGCTGATGATGAGGAGAGGGCGGAAGGGTCCTGCGTCTCTGGGCAGGACTGCCACCTGCCTGCCGCCCAGGGCTCGGGGCCTCCGCGCAGGAAGCAGCAAACCCAAACAGGAAGTGGCAGAAGAGAAGGAGACGTCCCTCTCGGAGAGCGAATCCTCGGAGCAGGaagaggaggaggaaggcagCTATGACAGTGAGGAAGGAGATGATGACATTAAAGCCCCGCCTTGCAAAGAGCCACCTCAGAGTGCCACCCTGATTGGTCCTTCTCCCTCATCTGTAGTGAAACTTGAAGCGAATCAGAAAGCCAAGAATAAGAAGGAAAGACAGGGGCTTCTGGGGTGTGGGCGGCTGTcaggaggggaaggggaagtGAAGGTGAGGAAGCGCACCCCCTGCAGAGCTGCTCCTCTCAGTGCAGCAAAGAGGCATCTGGAGAGCCAGGAGCACGTGGGTGGGAAGCGAGGCAGGGGCCCCAGGCAGCAACAGCAGGCATGGGGAGGGGCAGGCCCCGGGGCCACCCCCTACAGACGCAGCATGGGGCTTCACGTCCTCCCCACACCCAGTGACAGATTAAAAAAGGCCACCCGGAAGACTGGTGTGCAGCAAGGTGTCCTGAGTAAGGAGAAAGGCAGCTGGGCAGGGGGAGCTCAGTCCCCACGGAGGGAGGACAACACCAAGGGCAAGAAAATCCGAAGCAAGCAGCCCAAGGGGCGTGCTGTCAGCCGTCTGCTCGAGAGCTTCGCAGCTGACGAGGGCTTCCAGATGGACGAGGACAGCAGTTTCTCCGAGGGGGACGAGGACCAGCCCCCCCCGGGTGCACTTCAGTCCAAGAGAAGCTCGCCAGCTGTCCCCAACTGCATCCTGACCAAGGACCTGCTGCTGGACGGGCTGAAGGTGTTGATCCCCAAGGAAGACGAGTTGCTGTATGCGGCCTATGTCCACACGCTGCAGCTGCCTGACATCTACAGCATTGTgattgagggagagagaggaaaccgACCGAGAATCTACTCCCTGGAGCAACTGTTGCAGGAAGCGGTGCTCGACGTGAGTCCAGAGTCGGAGGCAGTGTTGATGGCAGGGACTCGGGTCTGTGCCTACTGGAGCGAGAGATCACGCTGCCTGTACCCGGGCTACGTGCGCAGAGGGGGTCCTGGAGAGGACGAGAAGGAGGGAAGTGTCATGGTGGAATTTGATGATGGAGACAGAGGACGGATCTCTCTACCCAACATCCGCCTCCTGCCACCTGACTACCAGATCCACTGTACCGAGCCATCCCCCGCCTTGCTGATCTCCAGTGCTGGTCGCCGGTGTCGAAGGAGTACACTGGAGAAGACCGTGCTAAGCGACGCGTCTTCTGAGAGACCAGAGATCACTGAGACACCAAGGAGCCTGGAAAAGAAAGGTGTTGGCAAGGCCAAGCCAGGCAAACCGAAAACCGTCAACTCAGGGACAAAGAGTCCAGTGTCAGAGGGTCTCTGTAAAAGCAGCAGTCCTCTCCTCAGCTGGCCAGCAGTGGCTGTTCCCAAGAAGAGAGCCCCCCACAATCTGTTCCAGCTCAATGGTGCTCCAAGAAGAACCCTCAAGGGCAAGGAGGCAGATGTTTTCTCGCTCCTAACTTCCCCAGTCGCCACTCCAGCAAAGGGCATTTTCAGCAACTCCTTTGAGGTGGACTCTTTCAGCAGCATCGCCAATGGATACTCGTCGTTTGGCAGCCAGCCCACTGTGATGCCACTCAGCCCCAGGAGCGCACCCTGTAGTCGGGGCAGGAGGCCCAGTGAAGGAGGACTACGGGGCAGGAAGGCAGGAGGGACAGAGTTCCTGGTCAAACTTGACCATGAGGGGGTAACATCTCCAAAGACCAAGAATGGGAAAGCCCTTCTGTTACTGGGGGCTCCCGGGCAGGGCAACAGACTGGAGAAAGGTTTTGGGGCTAAAGGGGTGACAGAACTCTCCTCACCTGTAGGATACTCTCACCCTGTCCTGCTTGTGAAGGACAACAAGAAGGGCGGTGGCACCAGGGCAGAGCTTCTGCTGAAGGGCGCTTCCCAACTTGGCAAACCCACCCCTACATTGGGCCTTGGGGAGTACTCGGAGTTCGGGCTCAACTGTCACAGCGACTGCCACAGCTCCTATTCCGACATGGAcgaagatgaggaggaggaggatgaaaggAGAGCCACTCTGGCCGCCGCCTCAGGAGGGCTGAGAACAGCAGGGCGCTTCCTGTCCCGCCTGTCCGTCTCATCCTCTTCCTCgggctcctccagctcctccagctcgGGCTCGCTCTCTAGCTCCAGCCTCTACTCCTCCGACAACGACTCCTCCTACAGCTCGGAGGATGAGGAGAGCTCCACGCTGCTGCTGCAGGGCTGCCTATCCTCCCATCATGCCCTGCTGCAGCCCCCTGAACCCCCCTCGGGTCAACAGCAGCGCTCCTTTGTGGCCAAGGCTATGGCCGTCACCAGCTCTAAGGGTGGCGGCAACAACGGCATCAATAGACCACTAAAAAGGAAAGAGGCTCCCACAACCCCCTGCACCCCCTCCTCTGCCAAGAACCCCAAGGACCTGGCCAAGAGACAGAGGCTGCCTTCGGTGGACAACAGGCCCAAGATCTCGGCCTTCTTGCCCGCACGACAATTGTGGAGATGGTCTGGGAACCCCACACAGAGACGGGGCATGAAGGGAAAAGCACGCAAGCTCTTCTACAAGGCCATAGTACGCGGCAGGGAGACGGTGTGCGTGGGCGACTGCGCGGTATTTCTCTCCGCCGGCCGGCCACACCTGCCTTACATCGGACGCATCGAGAGCTTCTGGGAGTCCTGGGCCAGCAACATGGTGGTGAAGGTGAAGTGGTTCTACCACCCTGAGGAGACCAAGATGGGGAAGCGGCACCGTGATGGCAAGCATGCCCTGTACCAGTCATGCCACGAGGATGAGAATGATGTTCAGACCATCTCCCACAAGTGCCAGGTGGTGAGCAGAGAGGAGTACGAGCGCCTGAGCCGAAGCAGGAAACAGAGCAACGGTCAAGACCTCTACTACCTAGCAGGGACCTATGACCCCACCAGCGGTCAGCTGGTCACTGTCGATGGCGTGTCCATCCTCTGCTAGCTGTACAGCCATCTGCTTTCTTGAGAAAACTACTGCAGGGTCCTTCCCAAGTGGTCAGGTGTGCAGTGCACCTATCTTCTGCCCCAGTGCGGGCATTGTGAAGGTGGCACAGAGCATCGTCTTGTCATTACTTGGAGATGTGTACGTCCTGTTCTCCTTACATTATTAACAGATGGTGTTGGGAGAGGTTGCAGTATGGGCCAGCTATACGCTGCACATTGCCTTTTAAGCGAACAACTGCATATCACGACTGGGATAAGTGCCGTAAGTGGGTACCCTAAAGCCATCCTGACGTGGCAGCCAGTGGTACCCAGTCAAGAGAGCCTCTCTGGAGCTGGGGGGGAGCAGTCAAAGTGTTGAAGATGCCACATTGTCTAAGGGTAGGCAGTGCTCAACAGAAAAGGTGAAGCAACAAGGAATGTAATGAAAACTATCCATCCAGATCCTGTTTTAAACACTATATTTAATACTTACAAACACttatgctgaaaacaaaaataactgtaCTGTTTCCTTCTGAGGAGGTGTCACACAGATATTACCTGAACTGGTCGTTAAAGTACCCAAAGTGCacttcagcagcagcaggtgaTACAAGTCCTGATCCTCACCAGCACACTTGGCTGCTCCCTACGGGGGCCCCCAGCAATGCAATTCCAGGCTCCTTCCCTGAGCGGCTCCTCCTACAGCATCCCAGAGAGGCACCGTATTTGTCCTGACCAAGGAGTAACGGCCAGACACCGCCAGCAATCTGAACTGCGGGAAACAGACTCCCAGCGCACTTCAGTAGAGAGAAGGCAACTCAGGCGAGGAAGTACTGAGGAATATCGAGCTGCCGCGGTGCGTGCGGGCCCTTCTTCCGAGAATGACTCGTGGCCCAGCAGGCAGACATCAGCCACACCCCCGCTCTGGCCCCCCCACGGACTACGCACGGGGAATCGAGCTTCTCAATCTGCCATGCTGCTGTGGACAGGGTCAGAGGCAGTCACCAAAGCTGAAGAGGAAGTTCATGTTTTCTCCAGATAAAGACTTGCAGTGACCAGGGCTAAGACTGCAAATGCAGGTGCTCTCTGACACCCCTGGCCGCAGCGCCGGTGTATGCGAGTTGTCAGAAGGGGTTAGTGTAGAAAACGAAGCCAAGCGTGCTGTCtgggcacacagagagagaggagaacaCGGGCCGCTCCTCAGAGGGGTTCGCTGGGTGAGCACTGCTCCAAAATGTATCTTTCAATAGAGGCTAATCTCCAGACCTCATTTTGATGTTTCCAGGGATGTTTTTAAAGCGCCgtatagtatataaatatagataaatatataaattaataaaaaaaaaaacttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53741 lncRNA downstream 4198 25587914 ~ 25588261 (-) True G43100
TU53713 lncRNA downstream 72466 25518811 ~ 25519993 (-) True G43072
TU53680 lncRNA downstream 168385 25366266 ~ 25424074 (-) True G43042
TU53682 lncRNA downstream 223396 25367598 ~ 25369063 (-) True G43044
TU53674 lncRNA downstream 240721 25289470 ~ 25351738 (-) True G43040
TU53777 lncRNA upstream 148122 25776374 ~ 25777679 (-) False AMCG00013245
TU53779 lncRNA upstream 148122 25776374 ~ 25777723 (-) True AMCG00013245
TU53786 lncRNA upstream 157891 25786143 ~ 25791759 (-) True AMCG00013246
TU53829 lncRNA upstream 491445 26119697 ~ 26119919 (-) True G43165
TU53835 lncRNA upstream 520164 26148416 ~ 26148633 (-) True G43171
AMCG00013239 mRNA downstream 54984 25526642 ~ 25537475 (-) True AMCG00013239
AMCG00013238 mRNA downstream 79588 25508197 ~ 25512871 (-) True AMCG00013238
AMCG00013240 mRNA downstream 87943 25493377 ~ 25504516 (-) True AMCG00013240
AMCG00013233 mRNA downstream 173881 25385739 ~ 25418578 (-) True AMCG00013233
AMCG00013235 mRNA downstream 233958 25357680 ~ 25358501 (-) True AMCG00013235
AMCG00013242 mRNA upstream 57217 25685469 ~ 25685725 (-) True AMCG00013242
AMCG00013245 mRNA upstream 148148 25776400 ~ 25777647 (-) False AMCG00013245
AMCG00013246 mRNA upstream 160147 25788399 ~ 25790305 (-) False AMCG00013246
AMCG00013247 mRNA upstream 168968 25797220 ~ 25803654 (-) True AMCG00013247
AMCG00013249 mRNA upstream 183466 25811718 ~ 25812734 (-) True AMCG00013249
TU53711 other downstream 75496 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 425701 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 514215 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 563455 25025876 ~ 25029004 (-) False AMCG00013216
TU53481 other downstream 690031 24882119 ~ 24902428 (-) True AMCG00013204
TU53964 other upstream 928102 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 1644977 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 1940512 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 2439961 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 2839060 28467312 ~ 28467906 (-) True G43684

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00010501 False 10580 mRNA 0.50 29 NC_007123.7 34563174 ~ 34716037 (-)
grasscarp (Ctenopharyngodon idella) CI01000055_01218959_01265449.mRNA True 11101 mRNA 0.52 32 CI01000055 1217166 ~ 1266051 (+)