RNA id: AMCG00013242


Basic Information

Item Value
RNA id AMCG00013242
length 195
RNA type mRNA
GC content 0.64
exon number 2
gene id AMCG00013242
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25685469 ~ 25685725 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGGCCGGGATTTCGCTCCCCCGCCTCACCTCTTGTCGGAGCGGGGCGCGCTGGTGCACCGCGCCGCCTCTCGGATTGCTTCGGCCGGCCACAGCTCCGTACAGCACCCCGGTCACTTCCAGCCTGGGAAATATTACCCATCTCCCATCCCCATGGCTCCACACTCAGtCAGCACGGTGTTTTGGCTTTGA

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53740 lncRNA downstream 93007 25588487 ~ 25592462 (-) False AMCG00013241
TU53741 lncRNA downstream 97208 25587914 ~ 25588261 (-) True G43100
TU53713 lncRNA downstream 165476 25518811 ~ 25519993 (-) True G43072
TU53680 lncRNA downstream 261395 25366266 ~ 25424074 (-) True G43042
TU53682 lncRNA downstream 316406 25367598 ~ 25369063 (-) True G43044
TU53777 lncRNA upstream 90649 25776374 ~ 25777679 (-) False AMCG00013245
TU53779 lncRNA upstream 90649 25776374 ~ 25777723 (-) True AMCG00013245
TU53786 lncRNA upstream 100418 25786143 ~ 25791759 (-) True AMCG00013246
TU53829 lncRNA upstream 433972 26119697 ~ 26119919 (-) True G43165
TU53835 lncRNA upstream 462691 26148416 ~ 26148633 (-) True G43171
AMCG00013241 mRNA downstream 57217 25592459 ~ 25628252 (-) True AMCG00013241
AMCG00013239 mRNA downstream 147994 25526642 ~ 25537475 (-) True AMCG00013239
AMCG00013238 mRNA downstream 172598 25508197 ~ 25512871 (-) True AMCG00013238
AMCG00013240 mRNA downstream 180953 25493377 ~ 25504516 (-) True AMCG00013240
AMCG00013233 mRNA downstream 266891 25385739 ~ 25418578 (-) True AMCG00013233
AMCG00013245 mRNA upstream 90675 25776400 ~ 25777647 (-) False AMCG00013245
AMCG00013246 mRNA upstream 102674 25788399 ~ 25790305 (-) False AMCG00013246
AMCG00013247 mRNA upstream 111495 25797220 ~ 25803654 (-) True AMCG00013247
AMCG00013249 mRNA upstream 125993 25811718 ~ 25812734 (-) True AMCG00013249
AMCG00013250 mRNA upstream 153743 25839468 ~ 25910122 (-) True AMCG00013250
TU53711 other downstream 168506 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 518711 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 607225 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 656465 25025876 ~ 25029004 (-) False AMCG00013216
TU53481 other downstream 783041 24882119 ~ 24902428 (-) True AMCG00013204
TU53964 other upstream 870629 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 1587504 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 1883039 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 2382488 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 2781587 28467312 ~ 28467906 (-) True G43684

Expression Profile