RNA id: AMCG00013243


Basic Information

Item Value
RNA id AMCG00013243
length 7572
RNA type mRNA
GC content 0.48
exon number 16
gene id AMCG00013243
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25746665 ~ 25775438 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAACACGTCGTGACTGTCAGGGTCTCTGCACCGCTGTTATTTCTCGCCCGGTGTCTGGCGATTTGCACTGAACGTCGATCGGGGCGTTTCGCCACCTGTGCGCCAGTACCGATGGTGACGTAAGCGTTACTTTTTTGGGGGTAATGCATTGAGTGGTTTTCGCCAATTAGCTGGAGTATGCtattaaaaagttattaaaaccAGTTTGGAGGGGCTGTGCAGGTAGTCGTTTGGCTGCTGAGGGGTCCTTAGTCTGACCGAAAGCCTTTCTGGGCGATTTGGCCAAACTTAGTCAGTCACGTTGCTCTCTTTATTTCCCTCCATCGCCACGTCACACATGTCAGAGTGACACAAAGTGAGAAGACACTACACCCATTTTGGTCGgggtgtgttgttttttggagttgcactttgttttggaGCAATAGTCAAACACCGGCATCTGCATTGATTTCACTTGATCGAATATTAAATACGCCACCATGACGGCGTCCAACTGGGGTCTGATCATGAACGTGGTGAACAGCATCGTGGGAGTCAGCGTCCTGACGATGCCCTTCTGCTTCAAGCAGTGTGGTATTGTCCTGGGGACTCTGCTGCTGTTCTTCTGCTCCTGGATGACCCACCAGTCCTGCATGTTCTTGGTTCACTCGGCCTGCAGCAGCAAGCGAAGGACATACGCTGGACTGGCCTTCCACGCGTATGGAAAAACAGGGAAAACCTTGGTGGAGACAAGTATGATTGGGCTGATGTTGGGAACCTGCATCGCCTTCTATGTCGTGATCGCTGACCTGGGGTCCAACTTCTTTGCGCAGATGCTGGGTCTTCCGgtgACGGGGAGTTTCCGCGTGGTGCTGCTCATCGCCGTCTCCCTGTTCATCGTGCTGCCGCTCAGCCTGCAGAGGAACATGATGTCCTCCATCCAGTCCTTCTCTGCCATGGCGCTTATGTTCTACACACTCTTCATGTTTGCGATAGTGTTGTCTTCACTGCGTTACGGGATAATCAGTGGGTCATGGGTGGAGAAAGTGCACCTGTGGCGTGTTTCGGGGGTCGTTCAATGCCTGCCAATTATTGCGACGACCTTCTGCTGCCATCCGCAAGTGCTGCCCACCTACGACAGCCTGGAAGAGCCCTCGGTCAAGAGAATGAGCACCATCTTCACATCGTCCCTCAATGTGGTCACAACCTTCTACATCACAGTGGGCTTCTTTGGCTACGTGAGCTTCACGGAGAACATCGCAGGAAACGTGCTGATGAACTTCCCATCTAACCTGGTGACGGAGATGATTCGTGTGGGCTTCATGATGTCTGTGGCCGTGGGCTTCCCTATGATGATCCTGCCCTGCCGCCAGGCCATCAACACCATGCTCTTCGAACAGCAGCAGAAGGATGGCACCTTCGCAGCTGGGGGATACATGCCCCCCCTCCGGTTTAAAATGATCACACTTTGCATCGTGTTTGGTACCATGCTGGGGGGAATTCTCATCCCCAATGTGGAGACCATCCTGGGACTGACTGGGGCCACCATGGGGAGTCTTATCTGCTTCATCTGCCCCGCCCTCATCTACAAGAAGATCCACAAGAACGGGCTCTCGGCTCAGCTGGTGCTGTGTGTAGGCCTGGGGATCCTGGTGATCAGCACCTTCACCACACTGTCCATTTCTGCGAGTGAGCCAGTGAAAGTGGAAGTCCCTGTTGCCTTGGAGGAATTGCCCATCAAGGACAAGCTGGCAGAGCCTATCAAGATCTCTGTTGAGAACCCAGTGGTGCCTGACAACGACGATGGGCAAAAGAAGCCTAATCCTCCCGGGGAGGTGGGGCAGGGCGAGAGGGAGCCGGCAGAACCCCCCCAGATCAAGGGTCCAGTGGAGATCccagagaggaagaagaaggaggaggaggtccAGTTAGACCGGCCTGATGCAGGTATGGCCCAACCGGTCGGAGAAGCCCATCGCCACGAGCCGCCTATCCCTCACGACGAGGTGATGGTGGACCAGAGTAAAGAcaaggaggagctggaggagaagagagaaCTGGAAGGTGACAAGGGGGCAGGGCAGGAGCAAGTGGGGGCCCAGGATGGGGAGCAGAAGGAGGCCGTGGTGGAACAGGGCGCCCAGGCAGTGGAGGTGCACAAAGAGAAAGAAGGGGACTTGAAGCCGGGTGAGCACGCCAAGGGGAAGGTGGCCGAGCCCGGGCAAGAAGACCAGGATAGGAAGGAGGGGCAGCAAGGAAAGGTGGAGAAGCCAGCTTACAAGGACCTCGATGGGGCCGGGAAGCAACAGGCGTCGATTGAGAAAGAGCATGAAGGGCTGAAGCCTGCAGTAGTGGACAAGGCCCTGGAGCAGCCAGCAGGGAGAGgtgatcagCTGCCCCCTGAAGCAGAGGATCATGGGCAGGGAGGGGAGGTCTTGGCTCCGGAggacagagaagagagaaacCCCGAGGTGAAGGAGACAGGACAGGAGGACAAGATGGACGAGGCCGAGCGGGAGGGCAAACTGGACCACAATGTGCTGCTGCAGGTGATCAaggagcagcaggagcagcagaagAGGCTCCTAGACCAGCAAGAGAAGCTGCTGGCCGTCATCCAAGAGCAGCACAAGGAGATCCACCTGCAAAAACAGGATGGAGAGGAGGAGCATCCCCCAGAGGGACTTCCAGAGGGTCAGGTGGGCCCAGGGGAGGAGAAGCCGGGGGAGAACGAGGAAAACGAAGTTCCAGATGCCCAGGGTGGGGGTGTGGATAGGCAGGTGGGAGCAGGAAGAGGTGCCGCTCTGGGCGTTGAGGAGCGGGATGGGCATCCTAACGGCAATGAGCTCCCAGGTGCTGTGGTGCAACACCAGAACAAACCTGCCCACGACGACAACTCTGACCACCATGATGTGGAGCAGGCCATACACGGTGACTCTCAGGGCGGGGGGAGCAAAGATGAGAAGCCCAAGGTGGCACACCCAGACTCTGCTCCCAAGCCAGTGAATGGCAATCAGGGGCTTCTTGAGGACCAGCCCGGCAAGGCGCAGCGggaacagcagcaacagcagcagcagcagcagcagcagcagcacagggaAGCCAGTGATGCCCATCAACATGAGGCAAGACCGGACATGAAAGCTGAGGTGGCAGCAGGTGGGCAGAGAGAGTTGGGAGCGAGAGGGGTGCCTCTGGGGCCAAAGCAGCCTTCAGCAGAAGAAATCAAGCCCAAAGCCAAGCATGAGCAGCAGGTAGGCGGGGCAGAAGGGCCGCCGGATAGGAAAGCGGACCATGTGGAGAGACAAgaccaagagagagaaaaggagagagctGAACAACTCCAGCGTGCCAGGGAGGCCCAGAAGGCGTTGGAGGAAGCCAAGGCCAGGGCCAGGGAGGCAGAAGCCAAGGCCGTGGCCAGGGAGGTGGCGGCGGATGCCAGAGCCAGGGAGGTGGCTGTGGAGGCCAAGGCCAGGGAGGAGGTGGCGGCAGCAGAAAGGCAGGAACCCATGAAAAATGGTGGACGGGACCTAAAAGAAGACACCCAGCTAAAGCAAGAGCCAGCAGCCAAGAAGGAGGCACAAATGGATGAAAGGCAGTTGCCCAAAAAGGAAGAAGGCCTGGACATGAGGCAGCAGCAGGAGTGGGTTCCCAAGGAAAATCCCCCCAGAGACCTGGGGGGCATGGACCTGAAGAGGAGACGGCGAGAGGTGGATGCCGTGGGGGTCCCGGGACTGGAGCCCCTGTTGGAGCTGGGGGGGTCGGACCTGCATGCTGCCCTGGAAGGCCAGCTGCTGGGGGGGGCCCTCGTTCACACCCGGCAGATCAAACAAGCACcagagcctgagagagagagataatgcATGCCTCACCAAAACCCGGGACCTCTGCACTGCCAACGCACAACACCGAGGCAGTTGTGCTTTTGGGGAACCCAAGCCTCAATACCAAATGCCCTGAGCTCCTTAAGTTGCCTGTTCCACATGGTTCCGGCTTCTCCCACATTATTCTTCGCTTGTAGCATCTGCAGTAGCTGCCAACAACAGAAATGGTTCTTCCTAACAGGGCAAGATTTCAGCATAAGAGCAGTTCACCCTGAGGAGAATCCATTTGCTCGACAATAGTCAAGTGCTTCACATCCGTTATCACAACATGATCAGCATATTGATTTGAGATACCGGAACCTGCTCTCTTCTGTCAGTGTGACTTGTGGGTAATTTACAAGGGCTGTTACATATTGGCCAAATCTTGCAGTGGAGTGTTCTGGGTAAAACGTTGGCGTTCGAAGTCCAGCACTTAACTTCATTCATATCAGTCAGCTTTAATTGTTGTCCTCgaccacaaaaaaataagtcaaCTAAGAACTAAAATCTCAGTAGCTCTTGAGTACAGTAGGCAACATTATAAAGTGTCACGTGTTTGCAATGGgaggacattttgttttagctgTGTCGCTCCAAATCCACACACTGACCATACTTTGTGTACTTTTCTCTGACTCCAAATTCTCCTCCTCCAACAATTAGCTCTGACCCGATTGAGTGACTAAAACATTCCAAAAGCTTTGTGACATTTCTTAACTTTCCAGGCACAGACAATGGCACTTCGGTGCATAAACTCCACAGTCAGTCCTGTGTCAAAGAAATTGCTTAAATCCTCAGTGCTGTTAGCTATATCCACAGATCTTTTACTACAAGGTTGCCGAAACTGgattgtttttataaaagaCTTTACATTCTTCAAAtcgtgaataaaaaataaaaaaaatgacattttcattgaaaTCGGTTGGTCTCGTGTTGTCAGTCAGTCTGATAAATACTAAGGATAGGGTAGAGTAACCCAGAGTCATTAAAGTGTAGTCCCCAAGATACCAACATTCCTGTGCCTGTCGGTCACATCGGCAGATACTCTGCTATGTGGCAGAATTCTCCCACCTGATCAGTACCTTGTAGTTTAGAATTCCCTGAACTCTGTCATTAGGTTGTAAGGGAACATCTATCAATAAAAATGCCAAAGTGGTGAGAAATTGATTAGTTTAATGGATTTTTaattctccctctctcatatgtatatatgtttaatgtagCTTTTAGCAGATGTTTagtacacacatacagaacagGCAGAGAAGAAGGTAAcgcattcctttattttttgttttggaccAAATTAGGTCTAAGATTGCacccctgttttttttttttttgttagacatctggaaataaaaacacagaggtGCAATCTTAGACctaatttgttacattttaatatttcgtAAGCTTTTGCATTGAAGTTCATAATCTCTGGGTTTTAGTTCAGATCTTGTGCCTCCAATTGTGGATTCCAGGAGAATAAAAATGGTGTATATGAGTGacttttttcattctctttctctGCTTTTGCATCATGTTCCAGTTGTTTATAGTCTCTTCTGTGTCCATTTGCAACAACTCtttggtggttgttttttcctccatgTTGTTCATCTGGATTTGAATAGAATGTATAATAGTCCATTCACAGCAACCTTAATGAAAATCCCCAGATCCATTCAGATGGACACAGCACTGTGTGAATTGGGCCAATTGGTCTGTATTCTGGTCATCCGACTGCAGAAGCATAAACGGCAGAAACAAAACTGCTGAAGATAGAGAGTTAACCATAGTGATCCTGatactgtgatttttttctggTGCAAAAATACTTCTGGATTACTGTTCTTCACTTAGTTAATTAGGAcatcctttattattattgttgttgttattattgttattattaatttaaaaacgtCCTTTTAAGGAGATCAAGGACATTCATATTATTCTGCTTCTCTGTAAAAAGCTGCTTGCTCTGATGGGATATCTGCAGAACTATACAATAGATTGGAGAGAGAACAGAGTTTGTTTTCCGAGTTCACGACAGACATAAAGCGCTGAAGTGAAGACTTCGGAAACGTttagtgtgattttttttttttgccatgaTCACAACAACTGCTTTGATTTGATGTAGCTTTTGGACACCATGACTAATGAAGCAGGTATGTCTGCTCTGACCTTGCACACTTCTGGCTTGTACTTGAACccttctgaaaaagaaagtcCAAAAGCAGAAACATCAGAACTTGTGTACCCTCAAAAGACCAGGCAGCTTTTGTTAGCTTTTTCTCCTACAGAGCTAGAATCCACAGAACACCGAGCATTTCCAACCCAAGACAAATAGTGTTAATCTTTATGGAGCAAGTAAGACAAGCTATTGTATTCGTGCAGTTTAGGCTCCACCCAGGCAAATTGTTTAATGGTCCATAATCTCTCCTTACATTCCACATTGTGCTCCGAATGCTCTGTGTATCTTTAGTGCCTTATTGTAATTCCAATGTTCTTCAGAGTTTTTAGTTCATTgtgctgtatatactgtactgtttctgttttgtatagGAATACCGCTCTGTGCCTCAGTCTCCAATAGTGTTAAAATCGGCTCCCAGCAATTTAGAAATCAAACTGGACCAGCAGCTTCTGGAACCGTACTTGATCTGCTGATGTGCAATTCAAGGCTCACTGTGCAAACAAGTAACTTGTGTAGGCAGTATCATAAATATGTTCAGGGATCCTTCTACGATTTGTATTCCTTTCTTTTGCCTTATGTTTGAATACAATCAAGGCTTGTACCTCTGTTGATTTGAAGGATGCACAATCGCAGCATGGGTCCGCTCATGTTGAATAACTCTGGGAATGTGTTTGCATTGGTGTTGTTTGTGCTTTGTGTATACAGTGATAACCTGCTGTTATCCACTCCTGCACAACCATCCCAAATTCCTTCCTCTTCCTGTGAGCTGTGCATTGAGACTCCACTGTTGTTTTCCTAGCATCCTCTGTTTGTTACTGTAGGAAAAGGCTGAACTCCTGTGGTGAACATTGTTTAGGGTTTAATAATGTAAGTGGTTCTTATTTGTAAGTGCAATTTGGTGTTGAATTAAATGGTTTGATCACTTGGATGTGGGTTTAAAGTCAGTATTGTTGGGGACTTGTGTTAAAACCCCCAAACTCTCCCAGATCTCAATTGAGAACCACACAGTCAAGTTTGAGTTCCAGAAAAAGCTTTTATCCCATTGATGAACAGTAACTACTGATTTCTCAAAAGCTTGGCAAAATTGTATTTAGataattttctgtattttccaaACTAATAAAACTAccaatttgtttgcattttacttAAGAAAACACAGAACTAAGGATGAAACTGTTACATTACAACGATCTGGGCTTTTGGGATTTCggagcaaattaaatgtacGGTTTGTTTCTGAAATTGGTTCACGGGTTTGGAAGGGTGGTTCCTGTGTTCTTTCTTTAAAGGgtctttaaaaaatgatttgctaGAAGCTGAAAAcaatttattgtaaaacaataaactattttgaaaaggaaTGCTTTTGATTATGGTGTTTCTCTTGGATGTGGCACATTTTATATTGTCCCCCTTCGTCTAGTTTAAAACCAACTACACTATGACAATCCTAAACTGCCCGTCTTTGTCCTGACCAGAATAGGGAAGCACAAGGGTGTGAAATGCAA

Function

GO: NA

KEGG:

id description
K14996 SLC38A10; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53726 lncRNA upstream 125426 25620937 ~ 25621239 (+) True G43085
TU53725 lncRNA upstream 126660 25619610 ~ 25620005 (+) True G43084
TU53723 lncRNA upstream 142427 25603998 ~ 25604238 (+) True G43082
TU53722 lncRNA upstream 145488 25600813 ~ 25601177 (+) True G43081
TU53721 lncRNA upstream 150724 25594697 ~ 25595941 (+) True G43080
TU53754 lncRNA downstream 20278 25795716 ~ 25798013 (+) True AMCG00013248
TU53792 lncRNA downstream 31981 25807419 ~ 25844594 (+) True G43138
TU53839 lncRNA downstream 377798 26153236 ~ 26161139 (+) True AMCG00013251
TU53853 lncRNA downstream 483272 26258710 ~ 26258982 (+) False AMCG00013255
TU53875 lncRNA downstream 592357 26367795 ~ 26396705 (+) False AMCG00013257
AMCG00013237 mRNA upstream 191871 25551595 ~ 25554794 (+) True AMCG00013237
AMCG00013236 mRNA upstream 225145 25513353 ~ 25521520 (+) True AMCG00013236
AMCG00013232 mRNA upstream 261045 25479858 ~ 25485620 (+) True AMCG00013232
AMCG00013234 mRNA upstream 322681 25421661 ~ 25423984 (+) True AMCG00013234
AMCG00013229 mRNA upstream 362193 25375516 ~ 25384472 (+) True AMCG00013229
AMCG00013244 mRNA downstream 2474 25777912 ~ 25784972 (+) True AMCG00013244
AMCG00013248 mRNA downstream 17967 25793405 ~ 25796522 (+) False AMCG00013248
AMCG00013251 mRNA downstream 380317 26155755 ~ 26161064 (+) False AMCG00013251
AMCG00013255 mRNA downstream 479536 26254974 ~ 26258950 (+) True AMCG00013255
AMCG00013252 mRNA downstream 484602 26260040 ~ 26312137 (+) True AMCG00013252
TU53706 other upstream 224984 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 976517 24768424 ~ 24770148 (+) True G42858
TU53407 other upstream 997270 24747492 ~ 24749395 (+) True G42846
TU52922 other upstream 3500875 22242429 ~ 22245790 (+) True G42453
TU52773 other upstream 4259857 21485321 ~ 21486808 (+) False G42344
TU53847 other downstream 479541 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 749388 26524826 ~ 26540049 (+) True G43263
TU54005 other downstream 1032726 26808164 ~ 26811615 (+) True G43309
TU54155 other downstream 1382864 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 1610227 27385665 ~ 27415286 (+) True AMCG00013298

Expression Profile