RNA id: AMCG00013244


Basic Information

Item Value
RNA id AMCG00013244
length 2703
RNA type mRNA
GC content 0.53
exon number 13
gene id AMCG00013244
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25777912 ~ 25784972 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGACAGAGCAGCATCATGGCAACCCTTATGGAGAGGCTGGCTTTCCTTCAGAAAGTTCCCACTCTGATGAAAGCCACCTCAGATGATGAGACGCCGTGCCCTGGATACCTCTTTGAAGAGATCGGAAAAATCTCCCATGAGTCTACTGGGTGCTGCCAGTGTCTCCTGGAGTACCTGCTGGAGCGGCTGCAGGCAGACTCCTGTCACGTCAAGCTGAAGGTCCTGAAGATCCTCCTGCACCTCTGCGGTCACAGCTCTCATCACTTCCTCACAGAACTGCGCCGCAATGCCACCTTTGTCCAGGAAGTGATCGTTTTCAGTGGGCCTCCTGATCCCGTCCATGGCAATGCGTTGTACCAGAGAGTGCGCACCACAGCGCAGGAGCTGGCCAGTGTGTTGTTTGCTGATACAGTGTCACCCCAGCCTGCTGTGTCCCCTTGCAAAGCTGCTTCTCCCAGTCTGGGAATGGGCTCGGACTCGGGGCTGAGGTCGGGGATGCAGGGATTTGGATACAGCCCTGGGAAACAAGTCTCGAATGGCACTCTGTTGGACAGGATCCAGAAGGCAGCAGAAGTCGTGGCCAGTGCTGTCCTGCCTCCTACGGAGCACCCTGGCATCCGTCTCCATGACAACAACTACCGGCCCGTGGTGGCGCCATGTGCGGTGGTGGAGGTGGCGGTGCCAGCGTGCGCCTACAGTCTGCCCGCCCAGAGTAACAGAGCAGCACAAAGATGTCCAGGCCAGGCCGGTGGGGGCTGGGAGGAGAGTGACAGTGGGCACAGCTCCCAGAACTCCTCTAATGAGAATGGCGACCTCTGCCGGGCCTCTGTGGGCGGCAGCAGCAAATCGGGGACGGACAGCCAATCGGGTGCCAGCCGTGAGAGTGGGGACCTGTCCGAACGGGTGGAGGTGTTGCATTTAGGAGACTGTGCCCAGGAAATGATCCTAATCAACAGCCTGACACAGGGGTCAAAGGTCTTCCTGACCAGAGAGGAAATGCAGCATTTTCTTAAAGAGTGTGCCATCCTGAACTGTGAGGTTGTGGTGGAGCTCCTCTGTCGAAAGCTGCAGGACCCCACGCAGTTTTCCCAGATGAGGGCCCTGTGTGCTGTGGCCTGTCTGATGTCATCCGACCTGCTGTCGCTGGACcacatatttggtgtgacccaGAAGCACTTGGTCCAGCTGAGTGAAGGCTCACCAGGGGCTGTAGCCAACAAGGCCACCAAGATACTGAGGCAGTTCGAAGCCCTGATGGGTGGACAGCAGGGGGCAGTGAGACGGGACGGCACTTTCTGCTCGGTGACTGCAGGTCCTTTGCCCCTGGACGAACCCTCGAAAGTGACAGGAGCCATCTTGCTGCCCACACCGAGGACGGGGACCTCCTTGAGCCTCGAAGGGAGTCACGATCCAGAGTCGGAGAGCTCATTTTCCAGTGGCCAAAACAACATCTCCTCTCCTCCTGGCTCAGAATGGGAGAGCCAGTGTCACCAGGCGGAAGTAGAGCACTGTGGGTCTGAACACCTGGATCAGTTTATGGACAGTGCCACCAAAGATCTGTCCAGCAGAGACTCGGAACAGCTGCAAATCAACAGTCCGTGTAGTGCAGACGCCTCTGTAGACCCCGAGCTGTCTGGCAAAGGAGCACAGGCAGGGGGCAGCGTTTCTCATCTGAATCCGGGATCTGAAACGCAAGAGGCTCCCGCCGGCTTCCCCACGGGCACGCTGTCTCTGTTCTCGGGCATGGAGCTCGTCACTGTGGGCAAGCCTGTGTGCTTCCCTTCACCACACACAGTACAGGACACTGATGCTGACAGGCCTGCTGACTCCGCAGACTCCTGCACCGAGCACAACGCCAGGACCTCGCCCACGCCCACGCCCGACTGTGGCTGTAGCCAGCAGCCCTCCGCCTTCTCCTTTATCAACATTTAAATGCCGAGAGGGGTGTTTCCGTGACtgtgataataatagtaataatatagtAAATCCACATATCAGTGGGATGATGTTCGGTTCATGTGATATGGGTTTTACATGCCATATGTTAGAGGAGAGTGGACTGAAATGTAAACAGCTCTGTCGCTCCAGGGAATGACATCAAGTGCGGCCGGGATTCTGAACAGAGGAGGAAGGATGTAGAACTGGCCTCTCATTGCCTGGCTTCACATTAGACATTGTGGCTCTCCTAAACTCTGGTATATTGCTGGATTACTCCAAGTtggctcctctctctcttattaAGAACTGTGTGCCAGATCATTGTGATACACTACAGGGATCCCCTTTGAGCTGCACCTGCTCTGCAATGtcttattaaaatgtgcatgtattattttctatttatttcataCTATGTTCTATCAATGATTATTTCAAGATACAACACTCAAGGTCACTACCAAAGCAGTCTTCGTATTTCATTCCACCTCGATCTTTGTTAGGAGACATTTGTAAAATCCATGCGATACTGAATAAGGGCAACCATTCTCCAACAGTTGTACTGTGGTTACCACATCTGTTCAGAGCTGCTTGTGTTTGTTACAAAGCTACATTTTGTTTCCTATGTTCATctattgaaaaaagaaaagaaactgtTTGTATccatatttgtttgcatttatttattatcacaggtgaaggttttattttgatgttagGTAGCCAGGGTCACCTTAGTGCTGCCGTTGGTTTCTGGGTGGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53726 lncRNA upstream 156673 25620937 ~ 25621239 (+) True G43085
TU53725 lncRNA upstream 157907 25619610 ~ 25620005 (+) True G43084
TU53723 lncRNA upstream 173674 25603998 ~ 25604238 (+) True G43082
TU53722 lncRNA upstream 176735 25600813 ~ 25601177 (+) True G43081
TU53721 lncRNA upstream 181971 25594697 ~ 25595941 (+) True G43080
TU53754 lncRNA downstream 10744 25795716 ~ 25798013 (+) True AMCG00013248
TU53792 lncRNA downstream 22447 25807419 ~ 25844594 (+) True G43138
TU53839 lncRNA downstream 368264 26153236 ~ 26161139 (+) True AMCG00013251
TU53853 lncRNA downstream 473738 26258710 ~ 26258982 (+) False AMCG00013255
TU53875 lncRNA downstream 582823 26367795 ~ 26396705 (+) False AMCG00013257
AMCG00013243 mRNA upstream 2474 25746665 ~ 25775438 (+) True AMCG00013243
AMCG00013237 mRNA upstream 223118 25551595 ~ 25554794 (+) True AMCG00013237
AMCG00013236 mRNA upstream 256392 25513353 ~ 25521520 (+) True AMCG00013236
AMCG00013232 mRNA upstream 292292 25479858 ~ 25485620 (+) True AMCG00013232
AMCG00013234 mRNA upstream 353928 25421661 ~ 25423984 (+) True AMCG00013234
AMCG00013248 mRNA downstream 8433 25793405 ~ 25796522 (+) False AMCG00013248
AMCG00013251 mRNA downstream 370783 26155755 ~ 26161064 (+) False AMCG00013251
AMCG00013255 mRNA downstream 470002 26254974 ~ 26258950 (+) True AMCG00013255
AMCG00013252 mRNA downstream 475068 26260040 ~ 26312137 (+) True AMCG00013252
AMCG00013254 mRNA downstream 529314 26314286 ~ 26318743 (+) True AMCG00013254
TU53706 other upstream 256231 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 1007764 24768424 ~ 24770148 (+) True G42858
TU53407 other upstream 1028517 24747492 ~ 24749395 (+) True G42846
TU52922 other upstream 3532122 22242429 ~ 22245790 (+) True G42453
TU52773 other upstream 4291104 21485321 ~ 21486808 (+) False G42344
TU53847 other downstream 470007 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 739854 26524826 ~ 26540049 (+) True G43263
TU54005 other downstream 1023192 26808164 ~ 26811615 (+) True G43309
TU54155 other downstream 1373330 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 1600693 27385665 ~ 27415286 (+) True AMCG00013298

Expression Profile