RNA id: TU53779


Basic Information

Item Value
RNA id TU53779
length 719
lncRNA type sense_over
GC content 0.48
exon number 3
gene id AMCG00013245
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25776374 ~ 25777723 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGCATTGGCCAATTGGAAGAGACCAGGAAGAGGGCTTGATTTCGGGGTCAACAGCATGGCGGCGTGCTTAGGACTTAGGAAAGTATGACAGATACGTAATGAGTGTCAACAGCGCTATTTAAATTGTACAGCGAACATGTCAACCGTGTGTTATTCCATTCAATAGTACCACACCCTCTTACTCATTGATTAAGCCTCCCTCTTGTTGCTCCTGTAAGCACGTCGTTGTAACCCACTCTAGTTATTATCAGATCAGACCGGGATGTCGGGTAGTAACGTTTGGGCTCGTAGCCGGGACAGGTTGAGAAGGTTCCCGGAACTTCTAACCCAGTGCGGGGCGGAGGCAGCTGCTTATGGGAAGTGCGTGtctgccaccaccaccactggGACGCAAGAGCTGAGGAAGGGCCTCTGCGCCCGGGAGTTCGAGGCGCTGAAGAGGTGCTTCGTGTCTGCAGCCAAGAAGAGtgtgaaataaatcacagcGATCTCTGACTGCAATGAGAAGAGATGCAAAGGAAGACCTGGGTTTCCCTGAACTGGAATCCATGTGAATTTGCAACCACATCCAGACCAAAGACACTGGAAATGGTCTCTACTTGAATGCCCACATTGTACACCCCGGGATTTGCTTCGGTTTGATAATGTATAGAGTAGTGCATGTGAATAAATACAGCTCATTTTGTaaaaaggctttttttattatttgtaaggATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53740 lncRNA downstream 183912 25588487 ~ 25592462 (-) False AMCG00013241
TU53741 lncRNA downstream 188113 25587914 ~ 25588261 (-) True G43100
TU53713 lncRNA downstream 256381 25518811 ~ 25519993 (-) True G43072
TU53680 lncRNA downstream 352300 25366266 ~ 25424074 (-) True G43042
TU53786 lncRNA upstream 8420 25786143 ~ 25791759 (-) True AMCG00013246
TU53829 lncRNA upstream 341974 26119697 ~ 26119919 (-) True G43165
TU53835 lncRNA upstream 370693 26148416 ~ 26148633 (-) True G43171
TU53848 lncRNA upstream 477273 26254996 ~ 26257823 (-) True G43184
TU53849 lncRNA upstream 477273 26254996 ~ 26257823 (-) False G43184
AMCG00013242 mRNA downstream 90649 25685469 ~ 25685725 (-) True AMCG00013242
AMCG00013241 mRNA downstream 148122 25592459 ~ 25628252 (-) True AMCG00013241
AMCG00013239 mRNA downstream 238899 25526642 ~ 25537475 (-) True AMCG00013239
AMCG00013238 mRNA downstream 263503 25508197 ~ 25512871 (-) True AMCG00013238
AMCG00013240 mRNA downstream 271858 25493377 ~ 25504516 (-) True AMCG00013240
AMCG00013246 mRNA upstream 10676 25788399 ~ 25790305 (-) False AMCG00013246
AMCG00013247 mRNA upstream 19497 25797220 ~ 25803654 (-) True AMCG00013247
AMCG00013249 mRNA upstream 33995 25811718 ~ 25812734 (-) True AMCG00013249
AMCG00013250 mRNA upstream 61745 25839468 ~ 25910122 (-) True AMCG00013250
AMCG00013258 mRNA upstream 702075 26479798 ~ 26484414 (-) True AMCG00013258
TU53711 other downstream 259411 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 609616 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 698130 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 747370 25025876 ~ 25029004 (-) False AMCG00013216
TU53481 other downstream 873946 24882119 ~ 24902428 (-) True AMCG00013204
TU53964 other upstream 778631 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 1495506 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 1791041 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 2290490 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 2689589 28467312 ~ 28467906 (-) True G43684

Expression Profile