RNA id: TU53786


Basic Information

Item Value
RNA id TU53786
length 4082
lncRNA type sense_over
GC content 0.47
exon number 3
gene id AMCG00013246
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25786143 ~ 25791759 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCTGAACTCATGCCTTTTCTCTTTGGCTGCTCGCTAGATTAACCAATCAGAAGACGCTATGAAAATGATACCAATCTGGATTGGCGGAACCAGTGACATCATAATTTCTAACTACTTCCAAAAACATCAAAAGTAACGGCCTGGGGGGCTCTATAATAAATACTTCATTGAATAACAGCAGAATAGCATAATGTTTTACAAACGTTTTAGCAAATAACACTATGGCAATCGATTTACTTAGCAGAAAATATCCAACTGCAACGTTTGCTACATATAACACTTGAAACCCACGCTCTTACAGAAACTCCGCATCCAAAGCCCCTTAACTCAGTGGAAATAGGTAGCCTTGAGAACCGCCTGTCTTTCGCAGCCTGTATTCCTGCTCATTGTGGCTCCGAAAACATTGCTTCAGTAACGCTTGTATTcaaatagtatttaaaatatatatattttgtaattttgtatttaaaaaaatatatattcttagaGCGTCCTCGTCCATAGCTAGGATTTAGGCGTCTTTCTCTCGCCTGTGCTGTTCGCGATGGCGTGCCCTCCCTTACTGCGCAGGCGCGATGTCATGTAAACAGCAGCAGCTGGGAGCAGTAGATAGAGGCACTGAGCGAGAGACGGCAGAGATCAGGGTGGGGAAACCGGCACAGACCCCACGAAACGCGTCGTGTCGACACCGAGGACGGCGGCTTTCTTTACAAAATGCTTTAGCGTTACCTTATCCTGCTGCCATATCGACGGATTCAAGTAGATACCGCGGGGGGGGGAGATATAACATTAAGCCGGGGGCGAGAGAGCGGTGCATTCGGGGGATCGGGCTGTACGGTGGCCGGTTGTGGTGGCATCGCGGAGAGGTTTGGGGGCGACAGCCGTGGGCATTGAGCAGGAGAggaagtgtttgtttgtttgtttgtttgtttgttttcagttgcgATTAATATATCTGCGGTTTAGTTTGTCTACAATCTCGACAATCCGAGCCGTGTTCGTGTTGGCGGCCCTTAGTCGTTGCCTCTCGCTTTCGAAAGCAGCCGATAGAGAGAGAAACCCGGCACGGTGGTGCTGTGTGGGGGTCTTTTATTAAGCAAGTCACTTTTATATTGACGCCAGATCATATTCCCATTAGATCTGACGTCTCGTAAGGACAGATCCGGAGACACGGTGCTGGATATTTGTGGCCTGCTCCTCTTGACCAGCTCTCTAGGCCGGTACACTGTTAGTGTTAGTGGGGGGGTGCAGATCTCTCACACCAAATTATAAAAGCATATTAGAGCCATTGACTTCACTACAGACTCGTAGCTACATGTAAGGGATGTGTGGATGCAGAGTGAAGTCGGTGACATGTTCTGACCGAAGATAAACCCCCAGACCAGCCCGGCACCGAGCGAGAGAGCTGCGGAGGAAGCGATTCATTATACACTTGGAAACCTTGCTTTTTCAGATGTTATCAGAAAACAGGAAACGGCGGCGGAACTGTGACCATGACGACAGCCAGCTCCTGCCCCAGGCCAAACGCGGGGGAGCGGGTCAGTCCCTGATCCCTGACCTCGGCCGGGACACCTGGGACTCTGAGTCGTCGAGCAGCGACAGCAGTGCGATCAGCAGTCCGGAGCGAGCGGCGGGGAGCGGAGGCAGCAGCCAGTCTGCGGAAAGCGCAGGGGGCCGGTCCAACGTGGGCGCCTGCAGCCCGGCCAGCGCGGCACACTTTAGCGAGGACTCGGCGTTGGAGGACTCCTACCACCGCATCAACCGCATCCTGAGAGAGGCCCACTTCCACAGCCTGCAGAGCCGCGGGCAGCCGGGTGCCACGTGACTGCCGCCCCCCCCCCGCACACACTTTCCCccgagagaggagaggagaggagaggagaggactgCGCCAGGGCCCCCGGAAGAGCGTCCCCTGCCCTCCTCACCCCACTGCCAGGGAGGGAGGCCTGGTCACGGGGCATCCGGCCTTTGCACAACTTCCTTACCTGTTGTCGTCAATGACTTTGCTTTCTCATGTttcaacatttaacaaaaaaaaaaaaaaagaaaaaatcatccATGGGTTGGTTGTGGTTTTGTGGCCCGTATGTTGACACGGATGCTTTTTCAGAAGATTCTAAGCGTTggttgcaataataataattaaacatgtttcctCCTGGTTTCTATTTAGGCCAGGGCAGTTTACATGCTCTTTGCAAAGCCTAGcgtgctatttttttttcttcttctagtTTGAGTACTTGCTGTTAATAGAAAAGAAGTGAAAGGAAAAGCAGACTTTCACTGCTGTCCTGTTCTCGTTTTGAATGACAAAGAAACCGAAATCCCTGTAGCTAAGGCTAAactgaggggggaaaaaaaactattctggACCTTACATTCCTCTTTTCAGTTGTAAATGGCATGCTTCGCTACTGCTGTGGTGACTAGTCAGAAATTGGATGTCGGTaggaagtgtttatttaatggtttattaCCAAAGCTGGACCCTTAGCCTATTATTCGGACTGTGGTTGGCAGCTGTAAAAGAACAGGGTCtcttattttaatacagaagAGTCAGGCCAATGTTTACCGTGGCATATTTCCGGAAACTTAGCGGTCTATTAATATACTTTGAGAGCGTTTTCTGTgttaaagacaaattaaatctACAAGAAAAACTGGTTTGGCACTTGCCAACTGACTTGAAAAATCAACACGTCTCTTCTCACTTTACCAGGGTGTCCCTTTTATCCCTGTCACAGAATCAATAGTGAACTCTTAAGATGCTTGTGTTGGGTACATATTTCTCGGTGACTTATGGGCAGTGCTGTCAGGTGAAACAACTGCTTTGTTCTTACCTTGGCAGCCTTGTGGTGACCAGCACAAATCGAGTCTGTGATCACTACGCTCACCGTGGCACATCGGCTCatgtaaatgtttagttttttttactccatgtattgcactttaacttACGCTGGAGAATCTCAATTGTCAGCCGAAGCAATAAATCGATGGAGATATTGATTCAGAGTTCATTAAGAGCTGCGCAACCTCCCCGTTTTGAAAAGCTCTCTGGAGGTCTACGATAAAATATAtaggactttttatttttcacgtGAGTAGCAGGGACACTGAAACTGCCAGCTCGGTCATCGAGGACGGGTATCTTAAAGGGACCGGTCAGAGTGTAGGCACTTAAATTAGCGTCCCTCTAAATATAGCCTCCACTATTAGCAGTACCTACTGGTTCACATGCCAGGGTTGGATGacaaaattcaaatgaaaacagatgtaGGGGTTTAACCTTTTCTGGTCTGGTTAGTTTTAGCTAGGAAGTTAGTGTCTGGGTTAATATTGAGGATTGTGTCGTACACTGTGATTCAGTGCAGGATTCTCAGTTTGTCCGGGAAGTGGATTCCTGCTTAAGTGAGTCTCACCAGGTCAATCTGTAATTGCCTGTCCTGGAGAGAGCTTTACAATAAAGTCTTCTCTAACAATAGAATATATATCTACTGTAACGGGCACAACTGGCTGCAGCAATGTACATTACGATGTACATGCAAACAGTTTTTGGTTAAGAGGCCAGTTTTAAAAGCCTGCATTGTCAGTGTGCCAGGAGTGTAGTGCGGCACGTGCCGGCCGTCTGGCCCGTCTCCGTGGTTAAAAAATAACCCGTGACGTTGTGACCCAGCTGCAGTGGAATCCCAACTAGAGTTAAATAGAGAGAGGGTggattaatacataataaattcaagttatgaatgtttttttaggGGCTGAGGTGATGAGGGCTGAATTTGAACAGTCCCTAACTGTCTGGGATTTCAGTTCCCAAGCCCTCACTGTTAACGAGTGCCAGTGTCCCTCGATTCCCATCTGTAGGTGCTGCCATGAGAAGCGTGTTGAGACAGGTCCCCTTCTGAAAAGTGTTCTGCAATCCTGCCCAGACCTTTTGTTCTTAATATTGCAAAGatcaaaaaacaacacttgattgttttgtatttagaaTTGTACATTACCTATTAGCATAaatttgagttgtttttttttttaaatccaccacttacatttgaaataaaacttGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53779 lncRNA downstream 8420 25776374 ~ 25777723 (-) True AMCG00013245
TU53777 lncRNA downstream 8464 25776374 ~ 25777679 (-) False AMCG00013245
TU53740 lncRNA downstream 193681 25588487 ~ 25592462 (-) False AMCG00013241
TU53741 lncRNA downstream 197882 25587914 ~ 25588261 (-) True G43100
TU53713 lncRNA downstream 266150 25518811 ~ 25519993 (-) True G43072
TU53829 lncRNA upstream 327938 26119697 ~ 26119919 (-) True G43165
TU53835 lncRNA upstream 356657 26148416 ~ 26148633 (-) True G43171
TU53848 lncRNA upstream 463237 26254996 ~ 26257823 (-) True G43184
TU53849 lncRNA upstream 463237 26254996 ~ 26257823 (-) False G43184
TU53851 lncRNA upstream 463237 26254996 ~ 26257823 (-) False G43184
AMCG00013245 mRNA downstream 8496 25776400 ~ 25777647 (-) False AMCG00013245
AMCG00013242 mRNA downstream 100418 25685469 ~ 25685725 (-) True AMCG00013242
AMCG00013241 mRNA downstream 157891 25592459 ~ 25628252 (-) True AMCG00013241
AMCG00013239 mRNA downstream 248668 25526642 ~ 25537475 (-) True AMCG00013239
AMCG00013238 mRNA downstream 273272 25508197 ~ 25512871 (-) True AMCG00013238
AMCG00013247 mRNA upstream 5461 25797220 ~ 25803654 (-) True AMCG00013247
AMCG00013249 mRNA upstream 19959 25811718 ~ 25812734 (-) True AMCG00013249
AMCG00013250 mRNA upstream 47709 25839468 ~ 25910122 (-) True AMCG00013250
AMCG00013258 mRNA upstream 688039 26479798 ~ 26484414 (-) True AMCG00013258
AMCG00013259 mRNA upstream 693674 26485433 ~ 26492758 (-) True AMCG00013259
TU53711 other downstream 269180 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 619385 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 707899 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 757139 25025876 ~ 25029004 (-) False AMCG00013216
TU53481 other downstream 883715 24882119 ~ 24902428 (-) True AMCG00013204
TU53964 other upstream 764595 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 1481470 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 1777005 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 2276454 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 2675553 28467312 ~ 28467906 (-) True G43684

Expression Profile