RNA id: AMCG00013247


Basic Information

Item Value
RNA id AMCG00013247
length 1380
RNA type mRNA
GC content 0.51
exon number 7
gene id AMCG00013247
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25797220 ~ 25803654 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAAGAGCTCATCGCCGGCGTGGAGAGCCTCCATTTCCACCTGGAAGCGGATGTTTTCTACCAGAAAGGTGCCCATTTCCTCCCCTTCCCTGGAATGGACAGCTCGATGTGCCCCTTCCGCCACCTGCGGGGAGAGAAGTCCATCGTGTGCAAGCACTGGCTGCGAGGGCTGTGCAAGAAGGGCGACCAGTGCGAGTTCCTGCACGAGTACGACATGACCAGGATGCCCGAGTGCTACTTCTACTCCAAATTCAACGAGTGCAGCAACAAGGAGTGTGCCTTCCTTCACATCGACCCCTCCAGCCGGGTGCGGGACTGCCCCTGGTACGACCGAGGCTTCTGCAAACACGGGCCAATGTGCAAGCATCGACACACCAGGAGAGTCATGTGCCCCAATTACTTAGTGGGGTTCTGCCCTGAGGGAGGTCACTGCAAGTTTGTCCACCCCAAAGCTGACATTCCAAACTGTCCTACCGAGCAGCCAAAGcagcCGCAGCCTGCCTTCGTAGTGAAAGTGGAGCCCCTGGTTCACCCGCAGAAGATCTTCCTGCACGAAGTCCCAGCATTCCCTTCTCTGTCCACCATGGAGATCGTCCACTACCAGCTCACCCGGCTGCAGGAGGCCGCCACCTCAACGCGCAATTCGGCCAGGCCCATCCACCTCATCACCTGCTACAAGTGCGGGCAGAAGGGCCATTATGCGAATAAGTGCAGGAGGGGACACCTGGGCCTGCTGTTCGGCCACTGAGCCCGCTGCGTGGCCGGGCCTGGTGGATGACATCACGAGTGCCTTTGGACACCGTTTTAGTCAAAACACTGTAGAACTCACTTTACACTAGTAACATACAGCAGTTTTCCTTTTTGCCTTGAAATGATCCAACATCCAGTTACAGAATTGACAGCTCTCTGTTGACATGGCACTTGCGTCCTCCTCCTTCAAAGCTGCTCAATAGCTCCATCTTTAAGATGGGCTTTAGCCGAATTGACATTAACTTGTCAAGATGCCTTTTTTCTTGTTACGCTTTCGAAGGACTGgagttctgctttttttttttttcctctttaggTTTTGGTCATCTTAGCGATGTGTAGTAACAATCGTTTTTCACACGTGTTGCACATCTGGCCTCATTCATAAAGGGGAGCTCTTCTTTGTCATTGTATTTTGGTTCAAGTGTTCAGTTCATCTTCCCTCATTGGGGATCACTTTGACAGGTTAGTAGTGACCAAACTGAAAAATCAAACAAGTCCTCGTTCATTCACAACCACTTTGGACAATGTATGAAAACATGCTTAGTTGTAATCTACCTCGGAGGAATCTTCACATTATGTGCCAAGGGgaaaacatttacatgtttGTGCTGTAACAAGAGAtcac

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K14404 CPSF4, YTH1; cleavage and polyadenylation specificity factor subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53786 lncRNA downstream 5461 25786143 ~ 25791759 (-) True AMCG00013246
TU53779 lncRNA downstream 19497 25776374 ~ 25777723 (-) True AMCG00013245
TU53777 lncRNA downstream 19541 25776374 ~ 25777679 (-) False AMCG00013245
TU53740 lncRNA downstream 204758 25588487 ~ 25592462 (-) False AMCG00013241
TU53741 lncRNA downstream 208959 25587914 ~ 25588261 (-) True G43100
TU53829 lncRNA upstream 316043 26119697 ~ 26119919 (-) True G43165
TU53835 lncRNA upstream 344762 26148416 ~ 26148633 (-) True G43171
TU53848 lncRNA upstream 451342 26254996 ~ 26257823 (-) True G43184
TU53849 lncRNA upstream 451342 26254996 ~ 26257823 (-) False G43184
TU53851 lncRNA upstream 451342 26254996 ~ 26257823 (-) False G43184
AMCG00013246 mRNA downstream 6915 25788399 ~ 25790305 (-) False AMCG00013246
AMCG00013245 mRNA downstream 19573 25776400 ~ 25777647 (-) False AMCG00013245
AMCG00013242 mRNA downstream 111495 25685469 ~ 25685725 (-) True AMCG00013242
AMCG00013241 mRNA downstream 168968 25592459 ~ 25628252 (-) True AMCG00013241
AMCG00013239 mRNA downstream 259745 25526642 ~ 25537475 (-) True AMCG00013239
AMCG00013249 mRNA upstream 8064 25811718 ~ 25812734 (-) True AMCG00013249
AMCG00013250 mRNA upstream 35814 25839468 ~ 25910122 (-) True AMCG00013250
AMCG00013258 mRNA upstream 676144 26479798 ~ 26484414 (-) True AMCG00013258
AMCG00013259 mRNA upstream 681779 26485433 ~ 26492758 (-) True AMCG00013259
AMCG00013263 mRNA upstream 692282 26495936 ~ 26500765 (-) True AMCG00013263
TU53711 other downstream 280257 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 630462 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 718976 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 768216 25025876 ~ 25029004 (-) False AMCG00013216
TU53481 other downstream 894792 24882119 ~ 24902428 (-) True AMCG00013204
TU53964 other upstream 752700 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 1469575 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 1765110 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 2264559 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 2663658 28467312 ~ 28467906 (-) True G43684

Expression Profile