RNA id: AMCG00013253


Basic Information

Item Value
RNA id AMCG00013253
length 4901
RNA type mRNA
GC content 0.53
exon number 20
gene id AMCG00013253
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26321766 ~ 26363091 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGAGACGGCCGACTGCAAGGACCAGCAGCTCACAGTGGCCCTGCGAATTCGGCCCCTGAGCGATGCTGAGCAGGAGGAATCGGCCACCATCGTGGCTCACAAAGTGGACGACCAGATGGTGGTTCTCATGGACCCCATGGAGGACCCAGACGATATCCTGCGTGCCAATCGCTCCCGGGAGAAGACCTATCTGTTCGATGTGGCATTCGATTACTCTGCTACACAGGATGAGGTGTACCGAGCAACCACCAAGGGACTGATCGAGGGCCTCATCTCAGGCTACAATGCCACTGTGTTTGCCTACGGTCCCACAGGATGTGGGAAGACCTACACTATGCTGGGGACAGACAGGGAGCCTGGGATCTATGTCCGCACTCTCAACGACTTGTTCCACGCCATTGAGGAGACCAGCGATGACATGAAATACAGCGTCTCTATGTCATATCTGGAGATCTACAACGAGATGATCCGTGATCTGCTCAACCCCTCCTCTGGGTTCCTTGATCTCCGGGAGGATTCCAAAGGGGTGATCCAAGTGGCAGGGATCACCGAGATCATGGAGCTGCTGATCAAGGGCAACAAGCAGCGTACACAGGAGCCCACAGCCGCCAACCAGACCTCCTCTCGTTCCCACGCCGTGCTGCAGGTGGCTGTGAAGCAGCAGAGCCGGTGCCGGGACGTCCTGCAGGAGGTGCGCTTCGCCCGGCTCTTCATGATCGACCTGGCAGGATCCGAGCGCGCGGCACAGacaCAGAACCGAGGGCAGAGACTTAAGGAAGGGGCCCACATCAACCGCTCCCTGCTGGCACTGGGGAACTGCATCAATGCCCTCAGCGAGAAGAATGGGAACAAATACGTCAACTACAGAGACAGCAAGCTCACGAGGCTGCTCAAGGACTCCCTGGGTGGAAACAGTCGCACTGTGATGATTGCACACATAAGCCCCGCCTCTATGGCCTTTGAAGAGTCACGCAACACCCTGGTGTATGCTGACCGCGCCAAGAGCATCCGTACTCGGGTGAAGAGAAATCTCCTGAACGTGTCGTACCACATCGCCCAGTACACCAACATCATCTCGGACCTGCGCAGTGAGATCCAGCGGCTCAAGAACAAGATCGCAGAGCAGGGCAGTCGGCAAGCCGCCGGGGACAGAGCTGACATCCGCAATGTGCAGGCTGAGGTCCAGGCGCACTCCTCTCACAGCCGCGCGGAGATGGAGCAGCTGAGGGAGCAGCTCATCGAGGCCTTCCGGCAGCAGATGGAAGTCCGCAAGAGTCTGATGGAGCTGGAGAACAACAACATGGAGATCCAGATTGACACGTCCAAACACCTGCTCACCATCGCAGATTGGGAACAGGAACGCTCGAGACGGACACGGAAGTGGCGTGCAGAACGACTTAAAGAGAGCTTCAACAAGGAGGACAGCGAGAAGGATTCAGACACGCCAGAGGAGCCTCCCGACGCCAGCGAGACGCAGGAGGTGGCCATGGCGAGAGAGAGTCTGGTGGCACTAGAGAAGCAGTTCCGGGAGCAGCAGGAGCGTGCACGGTGGCTGGAGGAGATGCTGCCTAGGCGGGTGAGCTCAGACGAGCAGCGCGAGGTGCTGGGGCTGCTGTGCAAGGTGCACGAGCTGGAGATCGAGAACGCTGAGATGCAGTCGCACGCCCTGCTCAAGGACAACGTCATCCGCCAGAAGAACTACGTGGTGCAGCGATTCGAGCGCCACCGCCACCTCTGCGATGAGATCATCCAGCAACAGAGGCAGTTCATCAACGATCACAGCCTGCTGGTCCCACCACACCTGCAGGAGCTGTATGAGATGTACATTAGGGAGCTGGATGAGAGGAACCTGGGCCGGGTCATGGCCCTGGACAAGGTCACCATTCGGACTCTGAAGGATGGTTCCCTGCCCAAGATCCCCTTACCTGGGAGAGGTCGTGACCCCTTGCTGGACATGGACTCGGACCAGGAGAGTGTGCACACGTTGCTCAATGAGAGCAGGCACGGACGGACCAGAGCCAGGAGACACACCCTGCCGCCCATCCACCCCGAGCCCGACAGcagcagcaacaacaacagggTGTTCAAGAGCAGCCCCCACGCCAGACAGATCAAGACCTCGGTGGTGATGACCCCACCGCCCATCCGCATCAATGGCCGGGACAGCCTTGAGCCGATTGTTCCAGATGGCATTTTGAGTTACAGCCAGCTGAGCCACAGTGTGAGCAGCCACCTGGACTCATCTCCGGAGAGCAGCGAGACCGGGGCCGACATCACCCTCTCCCACCGAGAGCGTCAGCAAATCCTCAAAGGCGTGAAGAGCATCACGGTGAAAGCTGCCCGGCGGCGCTCCAAAGTCCTCGAAGGGGACGCTCTGCGGCtgcccctcccctcccccctggAGCCCCCGAAACACAAGAGCAGCCTGTCCCTGAGCGAAGCCTCCCCCCACGCCCCGGCCCCCCGGCAGGACAGGCTGCCCAGTCCGGATCTACACCATGCCACCTCCGAGGACAACCTGTCCAGCAGCACCGGGGAGGGGCCCGGCCCACAGACCACCTGGACACGGCCCCAGCAACGCCGGCCGGCAGCCAAGAACAACCTGCCCCGCGAGCATGACTTCGAGGCACGACGCCGCAAGAGGAGGTCCCGCTCCTTCGAGGTCACGGGACAAGCGctccccCAGTCTAAGAACACAGCCCAGCGTTTCCGCCCCCTGGACAGTACCTCAGACCCTCACCTCAACAGCCAGCCGCCCGCCCCTCCCCTGCGTCCCCAGGCCAGGGGCGTCCTCCCACTCTCCAAAGTCCGGCTCCCTCACCAACCAGGGCCCACCACAGCTGCCTCTGACTCGTCTTCGTCCAGTTTCCCCCTTAACCACCCTGGGAACCTCAAAAGGGGGGCTCAGCACAGGCAGCCACAGCCCCTGCTCTACATAACTACCACCAACAATGGGGGACAGCGCATACGCAAGCACTGAgcttcccctcctctctccccccggCCACACAGCGCTGGGCAGCCTGGGATACCACAGCACCTACAGACACTGTACTTTGGACACTCATTAAAACGGGTGACAGTTGCTTTTGGAACAGGAAAATCTCTTCTTTGGTACAGGTTAGGAAAAAGGTGTCATTCTGGGTTTGAAGGAGGACAAAATTATTCCTGTGCCTGGATGGTTCGGAGACAGAAGTCTTGGTTATCAATCGGTGCCTTCCTGTTTTCAGCCCTCACCTGGACACCTGACTGAAAGCCACCTCATATTAATGTCCCTTTGCGATGTGACACCATAGCTCTTAAACAGTTCAGTTGCACTGACAGATGCCAATGTTACCCGGGCAGGTCCAGGAGAAACTTAGTCTTCATGTggataaaagagagagagagaagttggACTACTAGAAGTGATCACTGTGCTTCAGGGGGAGATATCCATACCCATGCAGCGATTTTCCTTCTGCTGTCTTTGGCTTAATATTCCCTGGTTCTGTTTCTATTTAATTACACTAGTTTTCAGTTATATGGGCTTTTCTTGGTCAGGGTGCCTCTGTAACAACCTGATGCAATCCTGAGGGGACACATCTGATGTGGGAGGGATCAGAAATTATAAGAATATGTCTTGGAGTCCCTCTACACAGTCAGCGACTCCAGTCTCACACTGGCTTATAATTAGAcactatttttaaacactgaataaaataaaaacactatataGAGACCTTTCCCTACAGGTATAGTAGATACAATTGGAGAATTATCAAGTATTAAACCACCAAGAGGGCGATTACACCAAGGAGCAAGTCTGAAACACAGACTTGGAAGCTTCAAACCCGCTGTGAACAAGAGACTGCACCAGTACTATGACACCAATGTCAAAACAGAACAGCTCAACTCCACTGGACTCTGTGGGGATAAGAGCTAGCCAGCCTTTTTGTAAATGATCACACTACTATGGAACATCTTTCTAGGGGGCTTTCATGACTTGTCAATAAACAACAGCAAATCAAGACACTTTAACCAGCATGTCATTACATGACATTATCTTGATTTGAATGCATTCACTGTTTTCATAGTAGCAAATGCAAAAAACTTTTCTCCCCAACTTTATGGTATTTGCTCTAGTCTTGTCACAATAGTTAGAGAGGTCAGTGTTCTTAGCCTAAATGAGTTTGCAGGAGCTGGGGATTGCTCTGCTTAAATGCAGggaatttgaatgaaaaagcaACATGTTACTGCCCTATTGTAATGCAGTATGTTAATACATCAACCTTAGCAGGCAAACACATACCTTTAACACCTCCTCTTTCTTCTGCTGCCTTGGATTTTAGCACTTTTCATCCAGTTTTGCGATGataaaattcatgtttttttttctattgttcgttttgtatttttgtataaataaaataaaattggaatCAAATGTGTAGCAAAACATTCCTGATACAATCAAGAAGCTGATCACAGCCTTTCCGCCTACCTCCCCAGCACAGCAGGCACGGGCTGCCATGTCACAGTCATTCTGCTTGTCTTTCAAACAGCAGGTACATGTGGAAACGGCAGTAAAATATGGAATCAACCATTCCCCGCTTATTGGAATTGTCTGTGCAGTGTTCACCAGAAACCGCATTTCCTCATGTTACAGTCCAGCTCAGTTTAATCCAGACTATTTAATTGAACAAGACCCCAGACTGCATGTTAACGGTATCTGAAGTGAGATTCTTATGTATGATGAAATAGAAAACCTTTGAATTTCAGGAGTGTGAGGAGTAAGTTCCCTGTTCATCCTAATAACTAtgcagtaaaatgtgtgtgtatgtatatatatatatatatatatatatatatatatatatacggggGGGAAATAATTCAAGAGGAAACCTGTTGTAG

Function

GO: NA

KEGG:

id description
K10401 KIF18_19; kinesin family member 18/19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53853 lncRNA upstream 62784 26258710 ~ 26258982 (+) False AMCG00013255
TU53839 lncRNA upstream 160627 26153236 ~ 26161139 (+) True AMCG00013251
TU53792 lncRNA upstream 477172 25807419 ~ 25844594 (+) True G43138
TU53754 lncRNA upstream 523753 25795716 ~ 25798013 (+) True AMCG00013248
TU53726 lncRNA upstream 700527 25620937 ~ 25621239 (+) True G43085
TU53875 lncRNA downstream 4704 26367795 ~ 26396705 (+) False AMCG00013257
TU53895 lncRNA downstream 86293 26449384 ~ 26478544 (+) False AMCG00013265
TU53997 lncRNA downstream 421862 26784953 ~ 26785561 (+) True G43303
TU54027 lncRNA downstream 509730 26872821 ~ 26930253 (+) True G43326
TU54034 lncRNA downstream 529523 26892614 ~ 26923139 (+) False AMCG00013281
AMCG00013254 mRNA upstream 3023 26314286 ~ 26318743 (+) True AMCG00013254
AMCG00013252 mRNA upstream 9629 26260040 ~ 26312137 (+) True AMCG00013252
AMCG00013255 mRNA upstream 62816 26254974 ~ 26258950 (+) True AMCG00013255
AMCG00013251 mRNA upstream 160702 26155755 ~ 26161064 (+) False AMCG00013251
AMCG00013248 mRNA upstream 525244 25793405 ~ 25796522 (+) False AMCG00013248
AMCG00013257 mRNA downstream 8432 26371523 ~ 26396705 (+) True AMCG00013257
AMCG00013256 mRNA downstream 35587 26398678 ~ 26404568 (+) True AMCG00013256
AMCG00013265 mRNA downstream 64855 26427946 ~ 26477041 (+) True AMCG00013265
AMCG00013266 mRNA downstream 153213 26516304 ~ 26524306 (+) True AMCG00013266
AMCG00013268 mRNA downstream 161789 26524880 ~ 26529893 (+) True AMCG00013268
TU53847 other upstream 63924 26254979 ~ 26257842 (+) False AMCG00013255
TU53706 other upstream 800085 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 1551618 24768424 ~ 24770148 (+) True G42858
TU53407 other upstream 1572371 24747492 ~ 24749395 (+) True G42846
TU52922 other upstream 4075976 22242429 ~ 22245790 (+) True G42453
TU53939 other downstream 161735 26524826 ~ 26540049 (+) True G43263
TU54005 other downstream 445073 26808164 ~ 26811615 (+) True G43309
TU54155 other downstream 795211 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 1022574 27385665 ~ 27415286 (+) True AMCG00013298
TU54201 other downstream 1226048 27589139 ~ 27590818 (+) True G43476

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000136_00995376_01015896.mRNA True 4705 mRNA 0.47 20 CI01000136 994688 ~ 1016784 (+)