RNA id: AMCG00013255


Basic Information

Item Value
RNA id AMCG00013255
length 342
RNA type mRNA
GC content 0.53
exon number 5
gene id AMCG00013255
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26254974 ~ 26258982 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCGGAAGTCCCGCCCCTTTTCCCTCTCGCTGGCGGACTGTGTTGCAGTCTACAAACACCACACCATGCAATCCCGGGTCCTCTTTGTAGCCAGGTGCACAGCTGTCAAGATCAAGAAGAACAAGGACAATGTGAAGTTCAAGGTGCGCTGCAGCCGGTACCTGTACACCCTCGTCATCACAGACAAGGAGAAGGCAGAGAAGCTCAAACAGTCCCTGCCACCTGACGAgacaaggggaaaaaaggcGAGCAGCTCAGTGGTGCAGCAGGATCACAGCTGTGACAAGGAAGACGTGACCTCTAAAAACACTGCTGTCGAGCAAGCCATACAATATTGA

Function

GO:

id name namespace
GO:0010638 positive regulation of organelle organization biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1902905 positive regulation of supramolecular fiber organization biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0051495 positive regulation of cytoskeleton organization biological_process
GO:0031334 positive regulation of protein-containing complex assembly biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0030838 positive regulation of actin filament polymerization biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0045010 actin nucleation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0032273 positive regulation of protein polymerization biological_process

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53839 lncRNA upstream 93835 26153236 ~ 26161139 (+) True AMCG00013251
TU53792 lncRNA upstream 410380 25807419 ~ 25844594 (+) True G43138
TU53754 lncRNA upstream 456961 25795716 ~ 25798013 (+) True AMCG00013248
TU53726 lncRNA upstream 633735 25620937 ~ 25621239 (+) True G43085
TU53725 lncRNA upstream 634969 25619610 ~ 25620005 (+) True G43084
TU53875 lncRNA downstream 108845 26367795 ~ 26396705 (+) False AMCG00013257
TU53895 lncRNA downstream 190434 26449384 ~ 26478544 (+) False AMCG00013265
TU53997 lncRNA downstream 526003 26784953 ~ 26785561 (+) True G43303
TU54027 lncRNA downstream 613871 26872821 ~ 26930253 (+) True G43326
TU54034 lncRNA downstream 633664 26892614 ~ 26923139 (+) False AMCG00013281
AMCG00013251 mRNA upstream 93910 26155755 ~ 26161064 (+) False AMCG00013251
AMCG00013248 mRNA upstream 458452 25793405 ~ 25796522 (+) False AMCG00013248
AMCG00013244 mRNA upstream 470002 25777912 ~ 25784972 (+) True AMCG00013244
AMCG00013243 mRNA upstream 479536 25746665 ~ 25775438 (+) True AMCG00013243
AMCG00013237 mRNA upstream 700180 25551595 ~ 25554794 (+) True AMCG00013237
AMCG00013252 mRNA downstream 1090 26260040 ~ 26312137 (+) True AMCG00013252
AMCG00013254 mRNA downstream 55336 26314286 ~ 26318743 (+) True AMCG00013254
AMCG00013253 mRNA downstream 62816 26321766 ~ 26363091 (+) True AMCG00013253
AMCG00013257 mRNA downstream 112573 26371523 ~ 26396705 (+) True AMCG00013257
AMCG00013256 mRNA downstream 139728 26398678 ~ 26404568 (+) True AMCG00013256
TU53706 other upstream 733293 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 1484826 24768424 ~ 24770148 (+) True G42858
TU53407 other upstream 1505579 24747492 ~ 24749395 (+) True G42846
TU52922 other upstream 4009184 22242429 ~ 22245790 (+) True G42453
TU52773 other upstream 4768166 21485321 ~ 21486808 (+) False G42344
TU53939 other downstream 265876 26524826 ~ 26540049 (+) True G43263
TU54005 other downstream 549214 26808164 ~ 26811615 (+) True G43309
TU54155 other downstream 899352 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 1126715 27385665 ~ 27415286 (+) True AMCG00013298
TU54201 other downstream 1330189 27589139 ~ 27590818 (+) True G43476

Expression Profile