RNA id: TU53853



Basic Information


Item Value
RNA id TU53853
length 273
lncRNA type sense_over
GC content 0.46
exon number 1
gene id AMCG00013255
representative False

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26254974 ~ 26258982 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGATCTTCCATGGAAAgcttattttacagtttattttagtaTGCCACTTGTATTCATCAGACAGATGCAACCTTGACACTGTGTGGTTTTGCTGTGCGAGATTCTGTGGGGAGCAGTTCCCCTGCCAGACGAgacaaggggaaaaaaggcGAGCAGCTCAGTGGTGCAGCAGGATCACAGCTGTGACAAGGAAGACGTGACCTCTAAAAACACTGCTGTCGAGCAAGCCATACAATATTGACATTCGGCTAAGTAGTTCTATGTAGTGTTGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU53839 lncRNA upstream 97571 26153236 ~ 26161139 (+) True AMCG00013251
TU53792 lncRNA upstream 414116 25807419 ~ 25844594 (+) True G43138
TU53754 lncRNA upstream 460697 25795716 ~ 25798013 (+) True AMCG00013248
TU53726 lncRNA upstream 637471 25620937 ~ 25621239 (+) True G43085
TU53725 lncRNA upstream 638705 25619610 ~ 25620005 (+) True G43084
TU53875 lncRNA downstream 108813 26367795 ~ 26396705 (+) False AMCG00013257
TU53895 lncRNA downstream 190402 26449384 ~ 26478544 (+) False AMCG00013265
TU53997 lncRNA downstream 525971 26784953 ~ 26785561 (+) True G43303
TU54027 lncRNA downstream 613839 26872821 ~ 26930253 (+) True G43326
TU54034 lncRNA downstream 633632 26892614 ~ 26923139 (+) False AMCG00013281
AMCG00013251 mRNA upstream 97646 26155755 ~ 26161064 (+) False AMCG00013251
AMCG00013248 mRNA upstream 462188 25793405 ~ 25796522 (+) False AMCG00013248
AMCG00013244 mRNA upstream 473738 25777912 ~ 25784972 (+) True AMCG00013244
AMCG00013243 mRNA upstream 483272 25746665 ~ 25775438 (+) True AMCG00013243
AMCG00013237 mRNA upstream 703916 25551595 ~ 25554794 (+) True AMCG00013237
AMCG00013252 mRNA downstream 1058 26260040 ~ 26312137 (+) True AMCG00013252
AMCG00013254 mRNA downstream 55304 26314286 ~ 26318743 (+) True AMCG00013254
AMCG00013253 mRNA downstream 62784 26321766 ~ 26363091 (+) True AMCG00013253
AMCG00013257 mRNA downstream 112541 26371523 ~ 26396705 (+) True AMCG00013257
AMCG00013256 mRNA downstream 139696 26398678 ~ 26404568 (+) True AMCG00013256
TU53847 other upstream 868 26254979 ~ 26257842 (+) False AMCG00013255
TU53706 other upstream 737029 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 1488562 24768424 ~ 24770148 (+) True G42858
TU53407 other upstream 1509315 24747492 ~ 24749395 (+) True G42846
TU52922 other upstream 4012920 22242429 ~ 22245790 (+) True G42453
TU53939 other downstream 265844 26524826 ~ 26540049 (+) True G43263
TU54005 other downstream 549182 26808164 ~ 26811615 (+) True G43309
TU54155 other downstream 899320 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 1126683 27385665 ~ 27415286 (+) True AMCG00013298
TU54201 other downstream 1330157 27589139 ~ 27590818 (+) True G43476

Expression Profile