RNA id: AMCG00013256


Basic Information

Item Value
RNA id AMCG00013256
length 2316
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00013256
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26398678 ~ 26404568 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAAACATCTTCGGCAGAAAGAGACGCACTCGAGTGACGGAGCAGGACCGAGCCGTGCTGGTGAGCGTCCGGGCACAAACACGGGGCTGGCGGCAATTGAAACAGCAGCGAGATAAGCTGAAGCAGTACCAGAAGAGGATCTCCCTGCACCTGGAGAAGGAGAGGCTACTGGCTAAGCAGCTGCTGAAGGATGGAAAGAAAGAGAAGGCATTGCTGCTGCTTAAGAAGAAGCGATACCAGGATCAGCTTCTGGACAAGACTGAAAACCAGATAAGCAACCTGGAGCGCATGgttCAAGACCTTGAATTTGCCCAGATTGAGATGAAAGTCATCGAAGGACTGAAGATCGGCAACGACTGTTTGAAGAAGATGCACGAGGTGATGTCTGTGGAGGAGGTGGAGCGCATCATGGATGAGACCCAGGATTCCATCGAGTATCAGAGGCAAATTGACGACATGCTGGCCGGGTCTCTAAACCAGGAAGACGAAGATGCCGTTCTTGCAGAACTGGAGGCTATAACTCAGGCGGAGGAGGTGGAGCTCCCAGAGGTGCCCTCGGAGCCCCTGCCCGCggagccagagccagagccagagaaGGAAAGGGTCAGGAACAAGCCCCAGCCGGAGCTGGTGGCAGCTTCGTAACAATTCTGCATCTCCGTCCCTCCTCCGTACTCGTAGCGACCCCCCAGCCTCTGCCATCTCCCCGCACTTCTCTTTTCTCCTGATGTTCCCAGGAATCTGATCCACGTGACTCTGATCTTCTCTGAGAATAGCAAGCCGCACTCCTATGAGACTGGAGAGCGTCTCGTCACCGCTCCAATTTTATACCGTCTCCAATTATCGTATTTCAGCAGTAAGAAATAGTTAAAAACGTTCAGTTCATCAGGTGATTCTCTCATTTATAATCCACTCAATGCCTACCATTGATATGGAAGGGTCATTTTGGACttctcattatttttaatgacactgtttaattgtaaaaacaagaaaatcaattttaagtgGTTGTGAAAGAATGGGTTTTCTTTACTGCTGCTCCAGGGTATGGGGTTCCTTTTTGCTAGAGTCTTTATTGGgggttttctcttcttttttgaGGGGTGGGACAGAtttggtttgcagttttttgttttttctggcaGAATGGTGTAGATCTTTCAAGGTGCTGGTGGAATATGCTCATAGCTCTGCCTGTTATAGGTTGGCAACCTGGTTCTAGACCAGTCCTCTGCTGTAAAAATCAAGCATGGTGTCGTCCATGTATGTGGTGAGATTCAGTGAAAGTGATGGTTAAAACCCATATTATGTGAAAATAGACTTGCTCTCcacatgttaaaaaataaaatcaacagtaATGTATCCTGTAAATCACTAACCATGTTCTATACCCTTAACCCTTGCTTGTCATTAAAACCTTTATGAATTATAATGCCTTTCCCTGTCCTTTTGGAGAACCAAAGTATGTAGTAGGACCTCTGTCAGATCAATTCCCCAACCTATCGCCGTGCCCCTCTTGCACACATCGCTTTAAAGTACAGAGGCAAAGTGAGCTTGTCACTTTAAACAGCCGAAGAAATTTGACTGGTGCTCTCTAGTGTTTCAGACCCAGATATCACCAGGTCTTATTGTAGAAACCAGGTTGTTTGCTTTCCTCAAGCTCACTGACTTAAGCTCTTCCACACATCTGATTCCTCGCCTGCATTGTTCTCGCAGGCTGCTTCACGGGTTTCACAAACACAAGTGCACCTTTTGGCCACTTCTGGGTTCCCTGTCTTGATTTGTGCTGTAAAACCATGTATGGGAACCtttttctgatgtgtttttcCAGACTGAGTTTGAGTTTATAGAAGTGATAAACCAGATCTTTGCTGGGCTTCTAGGATCTTGGTTACATGTCCTTTCATGCCATAAAGTAGTGATTGACACTTTTTTCTGATTTGATTCAGTATTATGAGTAGAAAGGGACTTGTAAAGCAATAAGGGGTCTCTGCAAAGCATAGCCTCTTGCTGAACATGAAAATATTGTGCTGACACTTCGAGAGATGGAGTAAAAAGACTCTGCTTTAGGAAGCATTTTTTCCTGTGGTACTCCAACAGTAGGTGTTTGTGGGAAAATTTGGACATCTGCCTAGTTACAGTCATATAGTGCTTGATCTGAAAATCTCATGGGGCAGACTTGAGGAGACCCTGCCGTTTGTGTGCATTGGAAGTAAGATTGCAACCAtgcaaccctggtcctggaggaccccccaccctgctggtttttgttccaaccgatctctcgattacttaattgaacccttaatt

Function

GO:

id name namespace
GO:0015031 protein transport biological_process

KEGG:

id description
K12195 CHMP6, VPS20; charged multivesicular body protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53875 lncRNA upstream 1973 26367795 ~ 26396705 (+) False AMCG00013257
TU53853 lncRNA upstream 139696 26258710 ~ 26258982 (+) False AMCG00013255
TU53839 lncRNA upstream 237539 26153236 ~ 26161139 (+) True AMCG00013251
TU53792 lncRNA upstream 554084 25807419 ~ 25844594 (+) True G43138
TU53754 lncRNA upstream 600665 25795716 ~ 25798013 (+) True AMCG00013248
TU53895 lncRNA downstream 44816 26449384 ~ 26478544 (+) False AMCG00013265
TU53997 lncRNA downstream 380385 26784953 ~ 26785561 (+) True G43303
TU54027 lncRNA downstream 468253 26872821 ~ 26930253 (+) True G43326
TU54034 lncRNA downstream 488046 26892614 ~ 26923139 (+) False AMCG00013281
TU54035 lncRNA downstream 492941 26897509 ~ 26904963 (+) True AMCG00013286
AMCG00013257 mRNA upstream 1973 26371523 ~ 26396705 (+) True AMCG00013257
AMCG00013253 mRNA upstream 35587 26321766 ~ 26363091 (+) True AMCG00013253
AMCG00013254 mRNA upstream 79935 26314286 ~ 26318743 (+) True AMCG00013254
AMCG00013252 mRNA upstream 86541 26260040 ~ 26312137 (+) True AMCG00013252
AMCG00013255 mRNA upstream 139728 26254974 ~ 26258950 (+) True AMCG00013255
AMCG00013265 mRNA downstream 23378 26427946 ~ 26477041 (+) True AMCG00013265
AMCG00013266 mRNA downstream 111736 26516304 ~ 26524306 (+) True AMCG00013266
AMCG00013268 mRNA downstream 120312 26524880 ~ 26529893 (+) True AMCG00013268
AMCG00013269 mRNA downstream 134331 26538899 ~ 26539854 (+) True AMCG00013269
AMCG00013270 mRNA downstream 153200 26557768 ~ 26564168 (+) True AMCG00013270
TU53847 other upstream 140836 26254979 ~ 26257842 (+) False AMCG00013255
TU53706 other upstream 876997 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 1628530 24768424 ~ 24770148 (+) True G42858
TU53407 other upstream 1649283 24747492 ~ 24749395 (+) True G42846
TU52922 other upstream 4152888 22242429 ~ 22245790 (+) True G42453
TU53939 other downstream 120258 26524826 ~ 26540049 (+) True G43263
TU54005 other downstream 403596 26808164 ~ 26811615 (+) True G43309
TU54155 other downstream 753734 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 981097 27385665 ~ 27415286 (+) True AMCG00013298
TU54201 other downstream 1184571 27589139 ~ 27590818 (+) True G43476

Expression Profile