RNA id: AMCG00013258


Basic Information

Item Value
RNA id AMCG00013258
length 1794
RNA type mRNA
GC content 0.42
exon number 7
gene id AMCG00013258
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26479611 ~ 26484414 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGACACAACTAGAGCAGTCCCAACGCAGTCTGCGCACCGTGACGTTATCCTACATGTacactgacattttgtttttttatggctCTATCTCACGTAAACCGAGTCTATATGATCTACTTCGGACAATCTGTGGTACTACTGCGATGATATGACATAAACACCGATATAATTCAATCTAAACTGGTTTCGCTGTAGCCTACTGCGTGTTCCCGGTCGGGGTCCTTCAGGCGCGTCCAGGACACCTTTGTTTGGGTACACGTTTACCGGAAGTGTGTGACTTCAAAATGATGAGACAAGATTCTAACGAAGACGTGTCCTTGTTCGATGCAGAGGATGAATCTCCCAGAAAGTCAAGGAAATCAAAGATCAGGCATCCACTGGCCTCCTTCTTCCACTTGTTCTTCCGGATCAGTGCGATCCTGGTGTACCTGCTGTGTGGGATCCTGAGCAGCAGCTTCATCGCCTGCATGGTCACCATCATCCTCTTGCTTTCCTGTGACTTCTGGACGGTCAAGAACATCACAGGGAGACTGATGGTAGGACTGCGCTGGTGGAACCAGGTGGATGATGACGGGAAGAGCCACTGGGTGTTTGAGTCTCGGAAGGCCTCTGCTCAAGGGAAGAAAGTGGCCTCTGATTCGGAGTCTCGTATCTTCTGGCTGGGCCTGGTTATCTGTCCCATCATCTGGGTCATCTTTGCTTTCAGCAGTCTCATCTCCTTCGAAATTAAGTGGCTGGCCGTGGTGACCATGGGTGTAGTGTTGCAGGGGGCCAACCTCTATGGTTATGTCAGATGCAAAGTAGGAAGCAGAAGGACTTTGAAGAACATGGCCACCAGTTACTTTGGCCGACAGTTCTTTCGGCAGgCGATGGCTAAAGAAGAAGGATCATAGAGGCACTTGGGAGGTGGTGAAGAGGTTCCAGCTGTAATATAGTTATAGCTAAAGATATTTTCATAAAAGTGGACTGTGGAAAGATACTCTGTTTCAGCCCTGTAGCGAGTCTTCAGGTGATCTTCTCTAAAGGTATTAATTATATCGGTGAAGCCAGATGTGTGACACTAACAAAGCAATGACAGACCTACAACATGCATTTAAGAGATGCTATACCCCACCCCTGCTGTTATATTGATGataaacaattatttgtttgtgtggaaaCCTGTAGTTACTCTACCCCAGCCTCTACGCAATGTATTACAAACtgtcctttaaaatgtatttgaacaagTCTAGATTTCAGCAGTGAGAGGGAATCAtgtaaataattttgaaatttgACAACTGTATTAGGATAATTTGGGCATTAGCTTTTTGGTATTCCATAGCTTGATAGCTTTTCTATTATGGCATCAATCTGAAGCCAAAGGGTTTATATTATTAACAGTAACAGCTTGATGATTGGAAGAGTTAACTGCAGGATTAAGCATTTGCTTGGGTTTATCCATGAATGGGTGAGTGTTTGATTTATAAGGATGGTCCTTTTgggttttgttggtttaatttctcttttaGTTGGGATATTTTCCTTTAGAAGGTTTTGACATTTACTTAAGCAATAGATTTTTATTCCTTCTTGCACATTGTCCAGATGTATTTGTACATTACCTTAAAGACATagaggggaaaataaacaaaccctttgtaaatatttattaaaccaatGTTTTGAGTGTGCTTTCTTATCACTTTTCAAGATGGATCACTTTCTTGGAGAGAGTGAATCTGCaactttaaaactgaaatgttcaaGAAGTGTAAATATTTAGCTGTACTCTAGTGTAGAAAGGAGGC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53873 lncRNA downstream 112578 26366979 ~ 26367220 (-) True G43204
TU53862 lncRNA downstream 167654 26309353 ~ 26312144 (-) True G43194
TU53848 lncRNA downstream 221975 26254996 ~ 26257823 (-) True G43184
TU53849 lncRNA downstream 221975 26254996 ~ 26257823 (-) False G43184
TU53851 lncRNA downstream 221975 26254996 ~ 26257823 (-) False G43184
TU54119 lncRNA upstream 509958 26994372 ~ 26995304 (-) True G43400
TU54130 lncRNA upstream 561947 27046361 ~ 27046563 (-) True G43410
TU54132 lncRNA upstream 565154 27049568 ~ 27049842 (-) True G43412
TU54137 lncRNA upstream 571138 27055552 ~ 27059242 (-) True G43417
TU54146 lncRNA upstream 642366 27126780 ~ 27126988 (-) True G43425
AMCG00013250 mRNA downstream 569676 25839468 ~ 25910122 (-) True AMCG00013250
AMCG00013249 mRNA downstream 667064 25811718 ~ 25812734 (-) True AMCG00013249
AMCG00013247 mRNA downstream 676144 25797220 ~ 25803654 (-) True AMCG00013247
AMCG00013246 mRNA downstream 689493 25788399 ~ 25790305 (-) False AMCG00013246
AMCG00013245 mRNA downstream 702151 25776400 ~ 25777647 (-) False AMCG00013245
AMCG00013259 mRNA upstream 1019 26485433 ~ 26492758 (-) True AMCG00013259
AMCG00013263 mRNA upstream 11522 26495936 ~ 26500765 (-) True AMCG00013263
AMCG00013262 mRNA upstream 16782 26501196 ~ 26512078 (-) True AMCG00013262
AMCG00013261 mRNA upstream 65607 26550021 ~ 26551291 (-) True AMCG00013261
AMCG00013264 mRNA upstream 69135 26553549 ~ 26556616 (-) False AMCG00013264
TU53711 other downstream 962835 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 1313040 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 1401554 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 1450794 25025876 ~ 25029004 (-) False AMCG00013216
TU53481 other downstream 1577370 24882119 ~ 24902428 (-) True AMCG00013204
TU53964 other upstream 71940 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 788815 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 1084350 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 1583799 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 1982898 28467312 ~ 28467906 (-) True G43684

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00009728 False 944 mRNA 0.44 7 NC_007123.7 46683114 ~ 46695839 (+)