RNA id: AMCG00013260


Basic Information

Item Value
RNA id AMCG00013260
length 2244
RNA type mRNA
GC content 0.57
exon number 17
gene id AMCG00013260
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26567270 ~ 26588100 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgggCAACTCCGACTCCAAGCTCAACTTCAGGAAAGCAGTGATTCAGCTCACCACCAAAACACAGCCAGTGGAGGCAACGGATGATGCATTCTGGGACCAGTTCTGGGCCGACACAGCAACGTCTGTGCAGGATGTGTTTGCGCTGGTGCCAGCGGCCGAGATCCGAGCCGTGCGAGAGGAGTCTCCCTCAAACCTGGCGACCCTCTGCTACAAGGCCGTGGAGAAGCTGGTCCAGGGGGCGGAATCGGGCTGCCCCTctgagaaggaaaaacaaattgtgcTGAATTGCACCCGCCTGCTCAGCCGCATCCTGCCCTACATCTTCGAGGACCCAGACTGGAGAGGCTTCTTCTGGTCCACGGTGCCAGGGGCGGGCCGAGCAGGGACAGATGAAGTGGACGATGACAGTGCCCGGCCCCTGGCGGAGTCGCTCCTGTTGGCCATTGCTGACCTTCTCTTCTGCCCGGACTTCACGGTCCAGAGCCACAGAAAAGGCGGTCCAGACACTGCAGAGGATATCCAGTCTATAGACAGCTGTGAGTACATCTGGGAGGCCGGAGTCGGGTTCGCTCAGTCCCCACCACTGAACTACATCCATGACCTAAACAGGACAGAGCTGTTGAAATTGCTCTTGACCTGTTTCTCTGAGGCCATGTACCTGCCACCCTCCTCTGAAAACAACATCCTCAACCCCTGGGTGACCTTCTTCTGCTCCACAGACAACCGGCACGCGTTGCCACTGTTCACCTCTCTGCTGAATGTGGTGTGTGCCTATGACCCCGTGGGCTACGGCATCCCCTATAACCACCTGCTGTTTTCCGACTACCGCGAGCAGTTGGTGGAGCATGCTGTGCAGATCCTCATCGTCACCCTGGAGCACGAGGGCAGCCCCGCGGCCAGTAGCCCCCACACCGACAGCCCCCCGGCCACAGCCACACTGGATGACCAAGACCCCGTGGGACCTGATAACCTTTTTGTCAATTACCTGTCCAGAATTCACAGAGAAGAGGATTTCCATTTCATCCTGAAGGGAGTGGCTCGCCTGCTGACAAACCCCCTGATCCAAACCTACCTGCCCAACTCCACCAAAAAGATCCAATTTCACCAAGAACTGCTTAAATTCCTGTTCTTCGTGCTGAAGAGCAGCGATGTGCTGGATGTGTTGGTGCCCATTCTGTACTACCTGAATGACGCTCGGGCTGACCAATCGCGAGTCGGGCTTATGCACATTGGGGTCttcatcctgctgctgctgagcGGAGAGAGGAACTTCGGGGTGCGCCTGAACAAGCCCTACTCTGTGCGTGTGCCCATGGACATCCCCGTCTTCACTGGCACCCACGCAGACCTGCTCATCGTAGTGATGTCTCCTTATCTCAAGAGCCTGTCCATGGTGGCAGCCAACAAGCTGCTGCACCTCCTGGAAGCCTTCTCCACCCCCTGGTTCCTCTTCTCTGCCTCCCAGAACCACCATCTGGTTTTCTTCCTACTCGAGGTCTTCAACAACATCATCCAGTACCAGTTTGATGgaaACTGTAACCTGGTGTATGCAATCATCCGCAAGAGGAACGTCTTTCACCAGCTGGCCAACCTGCCCTCCGACCCCTCGTCTATCCAGAAGGCCCTGCAGCGGAAGAAGAAGTCCCCCGAAGCCATCTCTCGCACCAGCTCCCAGGAGGGCTTGTCCATGGAAGGCTCCCGCCCTGCCGCCCCTGCAGAGCCCGGCACCCTCAAAACCAGTCTCATTGCCACACCAGGTATCGACAAGCTGACAGAAAAGTCACAGGTCTCTGAAGATGGCACGATGATCTCTTTGCAGAAAACAGATTCTCCCCAGACACCCTCGGACAACAGTGGCATCGCCGGGGTCAGCGACACAGAGTCCAACTCGGGCAGAGACAACGAGGATGTCTTCTACACTGAGACCGAGAGGAGGCGACTGTCCAATGTGTCGTCCGCTGCCCAGTGGATCCCCACGCCAGACTGGGTGCTTTCCTGGAAAACCAAGCTTCCCCTCCAGACCATCATGCGTCTCCTGCAGGTCCTAGTACCTCAGGTGGAGAAAATCTGCATTGACAAGGGTCTGACTGACGAGTCAGAGATCCTGAAGTTCCTGCAGCACGGGACGCTGGTGGGCCTGCTGCCAGTGCCACATCCCATTCTCATCCGCAAGTACCAGGCCAATGCGGGCACTGCCATGTGGTTCCGCACCTACATGTGGGGCGTCATCTACTTGCGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53911 lncRNA downstream 87420 26479611 ~ 26479850 (-) False AMCG00013258
TU53873 lncRNA downstream 200050 26366979 ~ 26367220 (-) True G43204
TU53862 lncRNA downstream 255126 26309353 ~ 26312144 (-) True G43194
TU53849 lncRNA downstream 309447 26254996 ~ 26257823 (-) False G43184
TU54119 lncRNA upstream 406272 26994372 ~ 26995304 (-) True G43400
TU54130 lncRNA upstream 458261 27046361 ~ 27046563 (-) True G43410
TU54132 lncRNA upstream 461468 27049568 ~ 27049842 (-) True G43412
TU54137 lncRNA upstream 467452 27055552 ~ 27059242 (-) True G43417
TU54146 lncRNA upstream 538680 27126780 ~ 27126988 (-) True G43425
AMCG00013264 mRNA downstream 10654 26553549 ~ 26556616 (-) False AMCG00013264
AMCG00013261 mRNA downstream 15979 26550021 ~ 26551291 (-) True AMCG00013261
AMCG00013262 mRNA downstream 55192 26501196 ~ 26512078 (-) True AMCG00013262
AMCG00013263 mRNA downstream 66505 26495936 ~ 26500765 (-) True AMCG00013263
AMCG00013259 mRNA downstream 74512 26485433 ~ 26492758 (-) True AMCG00013259
AMCG00013272 mRNA upstream 18972 26607072 ~ 26614584 (-) True AMCG00013272
AMCG00013271 mRNA upstream 59588 26647688 ~ 26649514 (-) True AMCG00013271
AMCG00013277 mRNA upstream 225758 26813858 ~ 26820977 (-) True AMCG00013277
AMCG00013276 mRNA upstream 242484 26830584 ~ 26832689 (-) True AMCG00013276
AMCG00013279 mRNA upstream 300388 26888488 ~ 26892418 (-) True AMCG00013279
TU53964 other downstream 9946 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 1050307 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 1400512 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 1489026 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 1538266 25025876 ~ 25029004 (-) False AMCG00013216
TU54172 other upstream 685129 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 980664 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 1480113 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 1879212 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 2665296 29253396 ~ 29254316 (-) True G43869

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000112_03085161_03094204.mRNA True 1468 mRNA 0.51 10 CI01000112 3085161 ~ 3094406 (+)