RNA id: AMCG00013262


Basic Information

Item Value
RNA id AMCG00013262
length 1751
RNA type mRNA
GC content 0.61
exon number 4
gene id AMCG00013262
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26501196 ~ 26512078 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGAGTTTTAGGACCCGGGGGATGTTGCGCGGGGTATTCATTTCTCCTAACCACTCCTCGCTTGCTGAGCATCTCGGGTGATCGTAGCAACCGGCCGGCTGTGCGCTGCGAGCCCAGGCGGACGGAGACTCTGCCCCGGCGCTGCAGCCCGATACCCCGCACACACCTTTCGGATTGCACCCCCCGCCATGGAGGGCTAGCTCCCCGGCTCTCACTCCCCGATGCGCTCATGTGAGGGAGCCGCAGACCCGCCGGCACCATGACTGACAGGTACCACAGAGCGGCCCGGGACGGCTACCTGgacctgctgaaagaggccaccAGGAAGGACCTGAACGCCCCGGACGAGGACGGGATGACCCCCACCCTCTGGGCCGCCTATCACGGGAACCTGGAGGCGCTGCGGCTCATTGTGGGAAGAGGGGGAGACCCAGACAAGTGCGATATCTGGGGGAACACGCCTCTACACCTGGCGGCTGCCAACGGGCACCTGAACTGCCTGTCCTTCCTGGTGTCGTTCGGTGCCAACGTGTGGTGCCTGGACAACGACTACCACACGCCGCTGGACATGGCGGCCATGAAGAGCCACATGGAGTGTGTGCGCTACCTGGATTCCATCGCTGCCAAACAGACGAGCCTGAACCCCAAGCTGGTGAGCAAGCTGAAGGACCGGGCTTTCCGTGAGGCCGAGCGGCGCATCAAGGAGTGCGTGAAGATGCAGAGGAAGCACCACCGGCGCATGGAGAAGAGGTTTCACAAGGAGGCGTCGGATGCCTCTGACGCCATGAGCTTCTCCAGCTACTCCAGCAGCACCCTGAGCCGCAAGCTGCTGCACCTCAGCACGGTCCCCACCTCCATGCCATACTCCCAGGCCACTCTTCATGCAACTGCCAAGGGCAAAACCAAAATCCAGAAGAAACTGGAGAAGAAGAAGCAGGTAGATGGGACATTCAAGATCTATGAAGATGGACGCAAGAGTGTGCGCTCGCTGTCTGGCCTACAGCTGGGCAGCGACGTCATGTTCGTGAAGCAAGGCACCTATGCCAGCCCAAAGGACCGGTCGCGTCGCAACATCAGGGACATGTTCTCCAGTGACGACGACGCCGTCTCACGTGCCATAAGTGACCCTGGCTTGCATATGGACACGGCCTACTCGGAGATCAGCACCGATTCGGGTCACGATTCCCTTTTCAACCGGCCAGGGCTGGGCACCATGGTGTTCAGGCGGAACTACGTCAGCGGGGGCCTGTTTGGTATCGGCCGGGACGACTGCAGCGTGGCCGGCAGCGATCTCGAGGGCCGGATGGGCAACGTGCGCCTCCGCAGCCGCCTGCAGCGCTCGCCCAGCCTCAACGACAGCATCGGCAGTGCCAACAGCCTGCAGGAGCGCAACCTGGAGGAGTTGCCCTGGGACGACGTGGAGCTGGGTCTGTACGACGATGATGAGCCTGAGACCAGCCCTCTGGAGACCTTCCTGGCCATGCAGGGCATGTCAGAGTTCATCCCTGTCTTTAAGAAGGAAAAGATAGACCTGGAGGCGCTCATGCTGTGCTCTGATCATGACCTCAAGAGCATCAACATCCCCCTGGGGACCCGGAAGAAGATCCTGGACTCCTGCAGGCGGCGGAGAATGACCATCGAAGATCCCGAGTCCATCGAGGACACAGAGCTGACCTCTGCCAAGGAGAAAGACAAGGACGTGGATCTGTGTCTGAGGAGTCCTGCGGCAGAGAGCAGTAGAATTGATTAG

Function

GO: NA

KEGG:

id description
K21878 USH1G; Usher syndrome type-1G protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53911 lncRNA downstream 21346 26479611 ~ 26479850 (-) False AMCG00013258
TU53873 lncRNA downstream 133976 26366979 ~ 26367220 (-) True G43204
TU53862 lncRNA downstream 189052 26309353 ~ 26312144 (-) True G43194
TU53849 lncRNA downstream 243373 26254996 ~ 26257823 (-) False G43184
TU54119 lncRNA upstream 482294 26994372 ~ 26995304 (-) True G43400
TU54130 lncRNA upstream 534283 27046361 ~ 27046563 (-) True G43410
TU54132 lncRNA upstream 537490 27049568 ~ 27049842 (-) True G43412
TU54137 lncRNA upstream 543474 27055552 ~ 27059242 (-) True G43417
TU54146 lncRNA upstream 614702 27126780 ~ 27126988 (-) True G43425
AMCG00013263 mRNA downstream 431 26495936 ~ 26500765 (-) True AMCG00013263
AMCG00013259 mRNA downstream 8438 26485433 ~ 26492758 (-) True AMCG00013259
AMCG00013258 mRNA downstream 16782 26479798 ~ 26484414 (-) True AMCG00013258
AMCG00013250 mRNA downstream 591074 25839468 ~ 25910122 (-) True AMCG00013250
AMCG00013249 mRNA downstream 688462 25811718 ~ 25812734 (-) True AMCG00013249
AMCG00013261 mRNA upstream 37943 26550021 ~ 26551291 (-) True AMCG00013261
AMCG00013264 mRNA upstream 41471 26553549 ~ 26556616 (-) False AMCG00013264
AMCG00013260 mRNA upstream 55192 26567270 ~ 26588100 (-) True AMCG00013260
AMCG00013272 mRNA upstream 94994 26607072 ~ 26614584 (-) True AMCG00013272
AMCG00013271 mRNA upstream 135610 26647688 ~ 26649514 (-) True AMCG00013271
TU53711 other downstream 984233 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 1334438 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 1422952 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 1472192 25025876 ~ 25029004 (-) False AMCG00013216
TU53481 other downstream 1598768 24882119 ~ 24902428 (-) True AMCG00013204
TU53964 other upstream 44276 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 761151 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 1056686 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 1556135 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 1955234 28467312 ~ 28467906 (-) True G43684

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00052196 True 1415 mRNA 0.54 3 NC_007114.7 56887355 ~ 56896702 (-)
grasscarp (Ctenopharyngodon idella) CI01000112_03100235_03105799.mRNA True 2683 mRNA 0.47 3 CI01000112 3099448 ~ 3106273 (+)