RNA id: AMCG00013263


Basic Information

Item Value
RNA id AMCG00013263
length 1116
RNA type mRNA
GC content 0.59
exon number 5
gene id AMCG00013263
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26495936 ~ 26500765 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGGTGTGCCAGCAGGCTGTGTGCAGGATGGAGAGAAGGGTGTACAGAGAGTGGGACAGGGGGAAGGGGATTGGGGCTGCGAACTCTGGGATGGGGAGCCGGGGCGCGTTATACAGGAGGGGCATCGGAGTGGAAATGCGGAGTCGGACGACTTGGAGGCTGTCGTCGGAGACCCTGCGCTGCTGCACAAGCTGGAGGGGGGTGGTCGAGGGCAGCCGGTGTTGCTGCACAGGAGCGGAGGAGTGCAGGACAaggaggcagacagagagacgtTGATGATGGAGCTCACCAGGCTGGTGCAGAGCGCAGTGAGCGAGAGCAGCTGGTGGGAGAGACAGGGGATCGACTGCACAATCCTAGcctctgcttttctctctttaCCTGCAGGCTTCCTGTTGCTGGGCTTTTCGCAGCCCCTGTTGTTTGCATTGGGAGTGATTCTCATGGGGACAGCGCACGCAGTCATCACCGTCAAGGGCACCCACCTGGCCAGCCATGGGGCCCTAAGCGAGTCCAGGGACTGGGCCGAATTTTGGGCCATGTTCTTCATTGAGGTCTGCGGCTCCTTCACTGCTGAGGCTGGCATACAGGCTCACGTCAAAATCCATCACGCCCACACCAACATCATCGGCCTGGGCGACTCCAGCACGTGGCGCATCCCCTTCCTGCCCAGATTCATCTACCTGTTCCTGGCCCCACTTGCTGTGCCCGTCATCACACCCCTGGTGGCTCTAGGTCTGCTGAAGGACCAGTCTCCGGGAGGCGCTCTGAGGACCGTGTGTATGATAGCCCTGGGGATCTACTCCCAATATTGGCTGCTCCTCCACATCTCAGGCTTCCAGTGCCCATCTAGTGCCCTGCTCTGTATGCTGCTGTGCCGTGCGCTCTTCTCCCTGCCCTACATTCACGTCAACATCTTCCAGCACATTGGCCTGTCCATGTTCTCTCCAAACCATAGGCCCAAGAGGATCTACCAAATGACCCACGGGGTTCTCAACCTGCCCCGGAAccccctgctggactggacatTCGGACACTCGCTCATTAGCTGCCATGTGGAGCATCACCTCTTCCCCTTCCTGTCTGACAACATGTGTCTGAAGGTGCGTTAA

Function

GO: NA

KEGG:

id description
K12419 FADS6; fatty acid desaturase 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53911 lncRNA downstream 16086 26479611 ~ 26479850 (-) False AMCG00013258
TU53873 lncRNA downstream 128716 26366979 ~ 26367220 (-) True G43204
TU53862 lncRNA downstream 183792 26309353 ~ 26312144 (-) True G43194
TU53849 lncRNA downstream 238113 26254996 ~ 26257823 (-) False G43184
TU54119 lncRNA upstream 493607 26994372 ~ 26995304 (-) True G43400
TU54130 lncRNA upstream 545596 27046361 ~ 27046563 (-) True G43410
TU54132 lncRNA upstream 548803 27049568 ~ 27049842 (-) True G43412
TU54137 lncRNA upstream 554787 27055552 ~ 27059242 (-) True G43417
TU54146 lncRNA upstream 626015 27126780 ~ 27126988 (-) True G43425
AMCG00013259 mRNA downstream 3178 26485433 ~ 26492758 (-) True AMCG00013259
AMCG00013258 mRNA downstream 11522 26479798 ~ 26484414 (-) True AMCG00013258
AMCG00013250 mRNA downstream 585814 25839468 ~ 25910122 (-) True AMCG00013250
AMCG00013249 mRNA downstream 683202 25811718 ~ 25812734 (-) True AMCG00013249
AMCG00013247 mRNA downstream 692282 25797220 ~ 25803654 (-) True AMCG00013247
AMCG00013262 mRNA upstream 431 26501196 ~ 26512078 (-) True AMCG00013262
AMCG00013261 mRNA upstream 49256 26550021 ~ 26551291 (-) True AMCG00013261
AMCG00013264 mRNA upstream 52784 26553549 ~ 26556616 (-) False AMCG00013264
AMCG00013260 mRNA upstream 66505 26567270 ~ 26588100 (-) True AMCG00013260
AMCG00013272 mRNA upstream 106307 26607072 ~ 26614584 (-) True AMCG00013272
TU53711 other downstream 978973 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 1329178 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 1417692 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 1466932 25025876 ~ 25029004 (-) False AMCG00013216
TU53481 other downstream 1593508 24882119 ~ 24902428 (-) True AMCG00013204
TU53964 other upstream 55589 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 772464 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 1067999 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 1567448 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 1966547 28467312 ~ 28467906 (-) True G43684

Expression Profile