RNA id: TU53964


Basic Information

Item Value
RNA id TU53964
length 379
RNA type TUCP
GC content 0.53
exon number 2
gene id AMCG00013264
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26553549 ~ 26557324 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTTTGGATTTTTACTCTGGATACCCCGAATAAGGTTTAACACGCCCTGTGCAGGAAAACTGGAAACTCTTGCTTGAGTTCCAGGGAGTGTTGCAGGACAGGAGAGACTGAAAACATGTGTGAGAAAAATGGCTTTGAAGAAGAGGACAGTCCAGGCCTGGGCCTTGCTTTGGGGGCTGCCCAGCCAGAGGAGGCAGGGGATGAGATGGACCCAGTGGTGGTGTGGGCCCCAAGTGGACGGAGGCTGGTTTCGGGGCTGATAGCTCTAAATTTAGTGCTTCTGGGGGCAGCTTTTGTAATAGGAGAGTCCTTTAACCCCAATGGCCTAAAGCACCAGGAGCCCCAGGTGTTCATTCTGCTGCTGATGGGACTCAGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53911 lncRNA downstream 76504 26479611 ~ 26479850 (-) False AMCG00013258
TU53873 lncRNA downstream 189134 26366979 ~ 26367220 (-) True G43204
TU53862 lncRNA downstream 244210 26309353 ~ 26312144 (-) True G43194
TU53848 lncRNA downstream 298531 26254996 ~ 26257823 (-) True G43184
TU53849 lncRNA downstream 298531 26254996 ~ 26257823 (-) False G43184
TU54119 lncRNA upstream 437048 26994372 ~ 26995304 (-) True G43400
TU54130 lncRNA upstream 489037 27046361 ~ 27046563 (-) True G43410
TU54132 lncRNA upstream 492244 27049568 ~ 27049842 (-) True G43412
TU54137 lncRNA upstream 498228 27055552 ~ 27059242 (-) True G43417
TU54146 lncRNA upstream 569456 27126780 ~ 27126988 (-) True G43425
AMCG00013261 mRNA downstream 5063 26550021 ~ 26551291 (-) True AMCG00013261
AMCG00013262 mRNA downstream 44276 26501196 ~ 26512078 (-) True AMCG00013262
AMCG00013263 mRNA downstream 55589 26495936 ~ 26500765 (-) True AMCG00013263
AMCG00013259 mRNA downstream 63596 26485433 ~ 26492758 (-) True AMCG00013259
AMCG00013258 mRNA downstream 71940 26479798 ~ 26484414 (-) True AMCG00013258
AMCG00013260 mRNA upstream 9946 26567270 ~ 26588100 (-) True AMCG00013260
AMCG00013272 mRNA upstream 49748 26607072 ~ 26614584 (-) True AMCG00013272
AMCG00013271 mRNA upstream 90364 26647688 ~ 26649514 (-) True AMCG00013271
AMCG00013277 mRNA upstream 256534 26813858 ~ 26820977 (-) True AMCG00013277
AMCG00013276 mRNA upstream 273260 26830584 ~ 26832689 (-) True AMCG00013276
TU53711 other downstream 1039391 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 1389596 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 1478110 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 1527350 25025876 ~ 25029004 (-) False AMCG00013216
TU53481 other downstream 1653926 24882119 ~ 24902428 (-) True AMCG00013204
TU54172 other upstream 715905 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 1011440 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 1510889 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 1909988 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 2696072 29253396 ~ 29254316 (-) True G43869

Expression Profile