RNA id: AMCG00013266


Basic Information

Item Value
RNA id AMCG00013266
length 3754
RNA type mRNA
GC content 0.43
exon number 6
gene id AMCG00013266
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26516304 ~ 26524306 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGATCAGAGCAAGGAGATGGAAAGTGAAGAAAAGTGTGCCAGTACCTTGGTCAGTATGTCCCATGACCCGGTTCTGGTGGGGGACTCTCAGTCCAGCCTTCCTGTGGCCCACACCAGCATCGCCCTTACAGACAATGGCCGGAAATGGGGAAGGCTACTGTCAGGGATCATAGCTGTCAACATTATTTTCCTGGGTAGTGCCCTGGTCGCTGGCGGGGCCTTCAGTGATGTGAACATCTCTGATGTCGACGTCCAGATCTTCCTGATCATCCTGCTCCTGCTGACCACGTGCTGGATGCTCTACTATGTGGTGTACAACTCGCGGTGGGACCACACAGTGCTCTACAAGGACAGCCATGCCGGGCCCATTTGGCTAAGAGGTGGTCTGGTAGCATTTGGAGTGTGCAGTTTGATAATGGATGTCTTTAAACTCACCAACTACGTGGGCTATGCACATTGCGACTCAGCTGTGAAAATCACGTTCCCTGTGGTGCAGGCggtgtttttaataatgcagACATACTTTCTGTGGGTTCATGCCAAGGACTGTGTTCAGACACAGCGCAACCTCACGAGatgTGGGTTAATGTTGGCTCTGACCACCAATCTCATGGTGTGGATTGCAGGAGTCACAGAAGAGTCCCTCCATCAGACAGTCACCAACAAAAGTGTTTTAGAAAAAGctgcttATTCTAACAGTAGCTGCAAGTGCAAGTATGACAGCTGCAAAATATTTGAGACAGGCTACTATTACCTGTACCCCTTTAACATAGAGTACAGTCTCTTTGCCTCTTGCATGACGTATGTGATGTGGAAGAACGTGGGGCGTGTCATAGATGACCATGTCCATCACCACGTCAAATTTCGCATCCAGGGGATCCTGGTGGGACCCATCCTGGGGGTCATGGTGATGGTAGCTGGACTGGTCGTCTTTATATTCTATGAGGTGGATGttggaaaagaagaaagaaagaacagggCGCTGTTGATGTATTATGTCATGAACATTATTGGCCTGACCTTGATGTCTATAGCCTCCTTGATTGGCTCTGTCATGCTCCACTTGAAGAAAGGGATCCACGTTTCAGGCAAAAACCCGATCCGCAGTCTGGATATCTTCCTGCTGCTGGGTGCCTCCTTCGGCCACTTCATCATCTGCTACTTCACCGTTGTGGCCGTGGTGGCGTCAAAAGGAGTCCAGTACCTTAACACACTGAACCTTGTCTGCTCCCTCATCACCATCATCGAGCTCTGCCTGCAGAATGCCTTCATCATAGAGGGCCTCCACAGGGAACCTTACCACGAACCCCCAGCTGTGGTTGACACTATCTTTGTCAACCAGCATGCCTTCAACTCCCAGTCCCagaaaggaaaagcagaagAGAATCCTTCCATGGACAGCTTGCAGCCCAACCACAATCCTGTTTGCACCACACACAGCACCCCCAGCGACATGTCCTCACAGCCCTCCATGTCCTGGAGGAGACGGGTTGTCAAGGAGGTCTCAGCCTTTCTACTCTTCTGCAATATCATCTTTTGGATCATGCCAGCGTTTGGTGCTCGTCCAGAGTTTGACAACAACTTGGGGGAGAATTTCTACAACTCTCAGATGTGGGTGCCTATAGTGAATTTTGGGCTGCCTTTTGGGATCTTTTATCGAATGCATTCTGTGGCTGGCCTCTTTGAGGTCTTCCATACTTcctaaaaactattttaaaactcTCTTTCATCCAGGGAATGTTGCTCAAGTAAAGTTAGGTATTCacatgttattcctgtggtattcatacttCAATTCATTATGAATTGGTGCCTATGGGAAAGTGTGACGAAAATTTCCAATACCATTttcataaaattaaacaaaagataATCCGATTGGGTGCAGACAGAGCCCTCTCGGGAGAAGGACATGAAAGCAAATGAAGTAAAGAAATAACCTACTCACAGTCTCCTCCAACCTCCTCACAGTCTCACAGTGGGGATTATGGGAGAATGGTGCTGtgatatgtattataaatagggagaaaaacacaaaatgtattccatAGGCTGTAGACCCACCTTTAGTCTTAATGGCAGAAGCAATTGTTATGTCTGATGGCTGTAGGAATAAAGTGCTGTTCCTCCAACAGCAGACGTGTCTGATGTGCCTGAAAAGGTTGGTCTATAAAGTCTCTTCCTGTTTCACCATTCCAGTTCAGATCAGAGATGTTCTATGGATTCAAGGTCACAACCCTGAACAAGCAATTGAAAGTTAAAAAGTTACTAAGTCACTGCATAGTTGTTCAAAATACCACAATAAATAGAGACAGTCACAGAGCCataacaattttaaacaaaaaaacatgacatctgTACCAATCCATTACCTTTGTAGGGAGGCTTATCCTGATATTTTGGGGGGTTGTATAATGTAATTGCCCCAATCTACTATGCTGAAGGAAGGCAATGCATTGGAGAAGCTGTAAAAGGAGATTCCAGTTGCTTCCATCTGACATCATATTCAGCCCAATGGGAAAAAAATTTCTGGTGCTTAATCTGGAAAACTCTTACACCAAAAGTCATGTGGGCTCTTGTATTATCCAGGAAACTGAGATTGTTAATTATCATGTCATGCAGAAGCCACATTTCTTCCTCTGCTGTGTCCCATTTCATTGGAAACTGCGGCAGTTCATCAGTTCCTATAATAACCAAGTAATactatatgaaatataaataatgtacaaatcTGAGATCTGGGGTTTGATCTTTGACTTCAATTGAGTTTTGAAAAACACTGCACTGCTATAGAAAACTGGATGACTGGAGAAAAAAGCAGAAtagcaaacaaataataaaaataaaaagactttgGTTTCATAACTGTGATGGAGTGTATGTTACTATGGGTAAACTGTGGTCTCTAGTACCTTGGACGGACACTGGTGACAACAGCCACACAGAGGCTAAGGGTCTAGAGATAAAATGGCTGCCAGTCTCCCAACACTTACACACAGGTGTGGCACATTATTAGCCAGGTGGCCGGGTATATAAAGGCGTTCTCTGTCAGAACAAAGGAGTTCTGTCTGGTGAAGAATGTTTCCACCTGTGGTTTAGAGAAGCCCTGTAATTGTttaagagttttgttttgtttgaataaacTACATTATAAGAGTAGTAACTcaacacatttcagttaaagcTTCTTTTTGAACTGCATTTATGTTCTGTACAATTAGATGGACTAATTGTGCAGTGCAACCTTGTTTGTAGATGATTTATGGGACATTTGAGAGCAATTAGTGGATTTCTGTCAGAGCCGCTAAATCATGGTATCATACCCACTGATGAGCCACAGTGCTCACAGAGacattttatgaaaattaaattaaaataatttatactgTAGAACTAAGCCAACTGTGGAACAGATTTATAAAGCCATTTATATTGCTGAATAATGACTTGAATGCCTCTTTTATACGAATGCGGCTTGCAACGTATGGTCTGTTttcaagaaatacataatttcacatttataatatatactatatgtgtgttcatcttttattatttttgactgTATTTAGGATTTTTCTGTGAAAACCTATTAATGCATaataaacatttctgaatttgaattCCTGGTACTGTATCTATCTGGCTCTTAATTTTCTAATCCATTTGGGTTTCTCtcttgaataaatacacagcgaataacacaaacactgtcaacataatttatattagaacatttattcttgttttgCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53895 lncRNA upstream 37760 26449384 ~ 26478544 (+) False AMCG00013265
TU53875 lncRNA upstream 119599 26367795 ~ 26396705 (+) False AMCG00013257
TU53853 lncRNA upstream 257322 26258710 ~ 26258982 (+) False AMCG00013255
TU53839 lncRNA upstream 355165 26153236 ~ 26161139 (+) True AMCG00013251
TU53792 lncRNA upstream 671710 25807419 ~ 25844594 (+) True G43138
TU53997 lncRNA downstream 260647 26784953 ~ 26785561 (+) True G43303
TU54027 lncRNA downstream 348515 26872821 ~ 26930253 (+) True G43326
TU54034 lncRNA downstream 368308 26892614 ~ 26923139 (+) False AMCG00013281
TU54035 lncRNA downstream 373203 26897509 ~ 26904963 (+) True AMCG00013286
TU54122 lncRNA downstream 486066 27010372 ~ 27010651 (+) True G43402
AMCG00013265 mRNA upstream 39263 26427946 ~ 26477041 (+) True AMCG00013265
AMCG00013256 mRNA upstream 111736 26398678 ~ 26404568 (+) True AMCG00013256
AMCG00013257 mRNA upstream 119599 26371523 ~ 26396705 (+) True AMCG00013257
AMCG00013253 mRNA upstream 153213 26321766 ~ 26363091 (+) True AMCG00013253
AMCG00013254 mRNA upstream 197561 26314286 ~ 26318743 (+) True AMCG00013254
AMCG00013268 mRNA downstream 574 26524880 ~ 26529893 (+) True AMCG00013268
AMCG00013269 mRNA downstream 14593 26538899 ~ 26539854 (+) True AMCG00013269
AMCG00013270 mRNA downstream 33462 26557768 ~ 26564168 (+) True AMCG00013270
AMCG00013267 mRNA downstream 64449 26588755 ~ 26608863 (+) True AMCG00013267
AMCG00013274 mRNA downstream 200928 26725234 ~ 26726439 (+) True AMCG00013274
TU53847 other upstream 258462 26254979 ~ 26257842 (+) False AMCG00013255
TU53706 other upstream 994623 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 1746156 24768424 ~ 24770148 (+) True G42858
TU53407 other upstream 1766909 24747492 ~ 24749395 (+) True G42846
TU52922 other upstream 4270514 22242429 ~ 22245790 (+) True G42453
TU53939 other downstream 520 26524826 ~ 26540049 (+) True G43263
TU54005 other downstream 283858 26808164 ~ 26811615 (+) True G43309
TU54155 other downstream 633996 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 861359 27385665 ~ 27415286 (+) True AMCG00013298
TU54201 other downstream 1064833 27589139 ~ 27590818 (+) True G43476

Expression Profile